Pairwise Alignments

Query, 534 a.a., ATP dependent DNA ligase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 1001 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Xanthomonas campestris pv. campestris strain 8004

 Score = 95.1 bits (235), Expect = 1e-23
 Identities = 100/312 (32%), Positives = 133/312 (42%), Gaps = 39/312 (12%)

Query: 221 ADWQAEHKWDGIRGQLILRGGQHFVWSRGEELMTDRFPELAALRDFLP-DGTVLDGELLA 279
           A W  E KWDG R    L  G+  + SR ++  TD FPE+A     LP     LDGEL+ 
Sbjct: 260 AQWPHEIKWDGYRLLTDLVDGRAQLRSRNDQAWTDSFPEVATAVQALPVRDARLDGELVV 319

Query: 280 WDYNGAGDAPLPFNALQKRIGRKTVPKKLLSEAPVILRAYDLLEDGGTDLRDRPLSERRA 339
            D  G  D    F+ALQ+ I          +  P+    +DLL   G DLR  PL ER+ 
Sbjct: 320 LDAQGRSD----FSALQRAIDG-------TARQPLRYLVFDLLGVAGVDLRATPLLERKQ 368

Query: 340 RLEALAAALPDTLPLRLSPTLTFDSWDALAQIRAKSREMGAEGIMLKRRASPYLAGRKKG 399
            L AL    P TL        +        ++ A S + G EGI+ KR  +PY  GR   
Sbjct: 369 LLRALLGETPGTL------AYSAHVIGRGPEVFAASADKGWEGIVSKRADAPYRGGR-SA 421

Query: 400 DWWKWKVDPLTIDAVMIYAQAGHGRRANLFTDYTFAVWDGNELVPFTKAYSGLTDAEFRQ 459
           DW K K +      V+ Y      R    F     A  DG +L    +  +G   A   +
Sbjct: 422 DWVKTKHEDSDEFVVVGYTDPKGARSG--FGALLLAQLDGTQLRYVGRVGTGFDSALLGE 479

Query: 460 ITAWVR-----KNTLE-------RFGPVRRVTPEHVFEIAFEGIQASPRHKSGVALRFPR 507
           ITA ++     + TLE       R   V  V P  + E+AF G       K G+ LR   
Sbjct: 480 ITAQLQALHSPQPTLELPAHIPSRPRDVHWVRPVLIAEVAFRGWA-----KQGL-LRQAA 533

Query: 508 MLRWRKDKPLQE 519
             R R+DKP+ +
Sbjct: 534 FKRLREDKPMSD 545