Pairwise Alignments

Query, 231 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 277 a.a., Mobile element protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  188 bits (477), Expect = 1e-52
 Identities = 102/227 (44%), Positives = 136/227 (59%), Gaps = 1/227 (0%)

Query: 6   EVHGVSQRRAGKALAVDRSSVRYRSV-RPDDAEARAAMKAVAAERRRFGYRRIHVMLERQ 64
           E+  +S+RRA +   + R + R+     P      A +  +A  RRRFGYRR+H +L  +
Sbjct: 3   ELTSISERRACRLAGISRDAFRHAPTPTPATQTLSARLVELAQARRRFGYRRLHDLLRPE 62

Query: 65  GIMMNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALTDGRQ 124
              +N KK+ RLYRE KL VRRR   K     R P+     PN+  S+DFV D L  GR+
Sbjct: 63  FPQVNHKKIYRLYREAKLSVRRRKKAKFPAAQRQPLRPARHPNEVISMDFVFDQLASGRR 122

Query: 125 FRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSVAVLS 184
            + L V DD++ EC+ +  D  +SG  VVR L+ +   RG P  V +DNG E TS A ++
Sbjct: 123 IKCLTVADDFTHECVDIAVDHGISGAYVVRVLEQIACFRGYPRAVRTDNGPEFTSRAFIT 182

Query: 185 WCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAR 231
           W Q+ GIE   I PGKPMQNG++ESFNG+FRDE LNE  F+SL  AR
Sbjct: 183 WAQQRGIEHILIEPGKPMQNGYIESFNGKFRDECLNEHWFTSLIQAR 229