Pairwise Alignments

Query, 231 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 277 a.a., Mobile element protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  188 bits (477), Expect = 1e-52
 Identities = 102/223 (45%), Positives = 139/223 (62%), Gaps = 1/223 (0%)

Query: 10  VSQRRAGKALAVDRSSVRYRSVRPDDAEARAA-MKAVAAERRRFGYRRIHVMLERQGIMM 68
           +S+RRA +   + R + R+  V    A+A +A +  +A   RRFGYRR+H +L  +   +
Sbjct: 7   LSERRACRLAGLSRDAFRHAPVPTPAAQALSARLVELAQTHRRFGYRRLHDLLRPEFPSV 66

Query: 69  NLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALTDGRQFRVL 128
           N KK+ RLY E +L+VR+R   KR +G R  +L    PN  WS+DFV DAL + R+ + L
Sbjct: 67  NHKKIYRLYEEAELKVRKRRKAKRPVGERQKLLASSMPNDTWSMDFVFDALANARRIKCL 126

Query: 129 AVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSVAVLSWCQR 188
            VVDD++RE + +  D  +SG  VVR LD     RG P  V +DNG E TS A ++W Q+
Sbjct: 127 TVVDDFTRESVDIAVDHGISGAYVVRLLDQAACFRGYPRAVRTDNGPEFTSRAFIAWTQQ 186

Query: 189 TGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAR 231
            GIE   I PG P QN ++ESFNG+FRDE LNE  F+SLA AR
Sbjct: 187 HGIEHILIEPGAPTQNAYIESFNGKFRDECLNEHWFTSLAQAR 229