Pairwise Alignments

Query, 493 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase (EC 6.3.2.13) from Pseudomonas fluorescens FW300-N2E2

 Score =  293 bits (750), Expect = 9e-84
 Identities = 197/488 (40%), Positives = 257/488 (52%), Gaps = 26/488 (5%)

Query: 15  FAERGRP--VTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARI 72
           FA  G    +  LALDSR V+ G LF  +PG+R  G   I  AL+ GA A+  +  GA  
Sbjct: 9   FAHAGHDLLIRELALDSRNVRAGDLFLAVPGARFDGRAHIADALKRGAAAVAYEVAGAT- 67

Query: 73  ARDVLDGAEVTLIVAEDPRQAFSAAAALWYG--AQPATMVGVTGTNGKTSVASFTRQLWQ 130
              VL   +V LI  +      S  A  +YG  ++   +VGVTGTNGKTSV     Q   
Sbjct: 68  ---VLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALD 124

Query: 131 GLGHAAANIGT--TGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQ 188
            LG     +GT   G  G   + L HTTP+P+ + A LA++   G    AME SSHGLDQ
Sbjct: 125 LLGQHCGIVGTLGNGFHGALESGL-HTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQ 183

Query: 189 RRLDGVRLVAAGFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADM 248
            R+  +    A  TN S+DHLDYH T +AY  AKA LF+    D    VINLDD  G  +
Sbjct: 184 GRVTALAFDVAVLTNLSRDHLDYHGTMQAYGEAKAKLFA--WNDLKCRVINLDDEFGRQL 241

Query: 249 MAIAHGAGAELLTVGTHK-DAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASN 307
            A      + L+T       A L +   +F+ +G           H  R  L+G F  SN
Sbjct: 242 AA--EKRESRLITYSLEDASAYLYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSN 299

Query: 308 VLVAMGLVMATGAQVGDLVPLLPRLATVRGRMQKVARRENGAT---VFVDYAHTPDALKT 364
           VL A+G ++     + +++ +LP+L    GRMQ++     G T   V VDYAHTPDAL+ 
Sbjct: 300 VLAAIGALLGLDYALDEVLKVLPKLEGPAGRMQRLG----GGTQPLVVVDYAHTPDALEK 355

Query: 365 ALRALRPHVLGRLVVVFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQ 424
            L ALRPH  GRL+ +FG GGDRD GKRPLM       AD V VTDDNPR+EDP  I   
Sbjct: 356 VLTALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPQRIFDD 415

Query: 425 VRAG---CPEATDVPDRAEAILRGVDALEPGDVLLIAGKGHETGQTVGDVVYPFDDAEQA 481
           +RAG       T V  R +AI + + +    DV+++AGKGHE  Q +    + F D  +A
Sbjct: 416 IRAGFTAVDNVTFVAGRGQAIAQLIASASADDVIVLAGKGHEDYQEINGERHAFSDLVEA 475

Query: 482 SVAVAALE 489
             A+ A E
Sbjct: 476 DHALTAWE 483