Pairwise Alignments

Query, 493 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 502 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase (EC 6.3.2.13) from Acidovorax sp. GW101-3H11

 Score =  268 bits (686), Expect = 3e-76
 Identities = 199/487 (40%), Positives = 255/487 (52%), Gaps = 24/487 (4%)

Query: 22  VTG-LALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVLDGA 80
           VTG L  DSRQ++ G  F   PG+   G   I  AL  GA A L + EGA     VL G 
Sbjct: 22  VTGTLQTDSRQIRPGDGFIAWPGAATDGRAHIGDALARGAVACLVEHEGAEAF--VLSGL 79

Query: 81  EVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGL------GH 134
            V  +          AA    +  Q   ++ VTGTNGKTS + +  +    L      GH
Sbjct: 80  PVAALHGLKAATGLIAADWFEHPTQGLDVLAVTGTNGKTSTSWWLAEALNVLSKNELYGH 139

Query: 135 -AAANIGTTGIEGDFS-ADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLD 192
              A +GT G+    +      TTPDP+ L  A  + A  G    A+EASS GL + R+ 
Sbjct: 140 DGCAVVGTLGMGTPPALTSTGMTTPDPVRLQRAFRQFADAGRGACAIEASSIGLAEHRMV 199

Query: 193 GVRLVAAGFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIA 252
           G R+  A FTNF+QDHLDYH    AY+ AK+ LF         AV+N+DD +GA++ A  
Sbjct: 200 GTRIRVALFTNFTQDHLDYHAGMAAYWQAKSMLFD--WPGLQAAVVNIDDVRGAELHATL 257

Query: 253 HGAGAELLTVGTHKDAMLRLTAQRFDADGQEMRFTW-KGV-AHQARLNLVGGFQASNVLV 310
            G   +L +V     A  RL A+        +RFT  +GV AH  +  ++G +  +N+L 
Sbjct: 258 AGRHLDLWSVSITGPA--RLAARDIGMGDGGLRFTVAEGVQAHVLQTRVIGLYNVANLLG 315

Query: 311 AMGLVMATGAQVGDLVPLLPRLATVRGRMQKVARRENGATVFVDYAHTPDALKTALRALR 370
            +  + A G  +   +    +L+ V GRM+++  +     V VDYAHTPDAL+ AL+ALR
Sbjct: 316 VLAGLRALGVPLEHALYACAQLSPVPGRMEQI-HQSGQPLVAVDYAHTPDALEKALQALR 374

Query: 371 PHVL---GRLVVVFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRA 427
           P      GRL  VFG GGDRD+GKRPLMGA A   AD V VT DNPRSEDPA I  Q+  
Sbjct: 375 PIAAERGGRLWCVFGCGGDRDAGKRPLMGAVAQQQADQVVVTSDNPRSEDPAAILHQILQ 434

Query: 428 GCPEATDV---PDRAEAILRGVDALEPGDVLLIAGKGHETGQTVGDVVYPFDDAEQASVA 484
           G   +T V   PDRA AI   V A  P DV+LIAGKGHE  Q    V  PF D   A  A
Sbjct: 435 GTIASTAVQAEPDRAAAIALAVAAAAPADVVLIAGKGHENTQETAGVHQPFSDMAHALGA 494

Query: 485 VAALEGR 491
           + A   R
Sbjct: 495 LQARGAR 501