Pairwise Alignments

Query, 725 a.a., excinuclease ABC, B subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 680 a.a., excinuclease ABC subunit B from Pedobacter sp. GW460-11-11-14-LB5

 Score =  708 bits (1828), Expect = 0.0
 Identities = 360/670 (53%), Positives = 487/670 (72%), Gaps = 18/670 (2%)

Query: 25  FRMATSFEPAGDQPTAIAELSEGVRNGERDQVLLGATGTGKTFTMAKVIEQTQRPAIILA 84
           F++ + ++P GDQP AI +L +GV   E  Q LLG TG+GKTFT+A VIEQTQ+P +IL+
Sbjct: 3   FKITSEYQPTGDQPNAIKQLVDGVNANEHYQTLLGVTGSGKTFTVANVIEQTQKPTLILS 62

Query: 85  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 144
            NKTLAAQLYGEFK FFP+N+V YFVSYYDYYQPEA++  S+TYIEK+  INE+I+++R 
Sbjct: 63  HNKTLAAQLYGEFKNFFPENSVNYFVSYYDYYQPEAFIASSNTYIEKDLSINEEIEKLRL 122

Query: 145 SATRALLE-RDDVIIVASVSCIYGIGSVETYEAMTQDLVAGQSYDQRQIMADLVAQQYRR 203
             T +L+  R D+I+V+S+SCIYG+G+ E +  M      G    +   +  LV   Y R
Sbjct: 123 RTTSSLMSGRRDIIVVSSISCIYGMGNPEDFSRMVFRFGVGLRISRNAFLHSLVEILYSR 182

Query: 204 NDAGFQRGSFRVRGDSLEIWPAHMEDRALKFSFFGEELESITEFDPLTGEKADTLDRIRI 263
               F+RG+FRV+GD+++I+PA++ D A + SFFG+++E ++  DP++G+  + L+ + I
Sbjct: 183 TTTDFKRGTFRVKGDTVDIFPAYL-DHAYRISFFGDDIEELSSIDPVSGKTIEKLEDMAI 241

Query: 264 YANSHYVTPRPTLQQAIVSIKKELRIRLDQLVAEGKLLEAQRLEQRTNFDIEMLEATGVC 323
           Y  + +VTP+     +I  I++EL IR +QL+A+  LLEA+RLE+RTNFDIEM++  G C
Sbjct: 242 YPANLFVTPKDRFNSSIWGIQEELEIRKNQLIADRHLLEAKRLEERTNFDIEMMKELGYC 301

Query: 324 NGIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAE 383
           +GIENYSR+  GR PG  P  L +Y P++ ++  DESHV+VPQI  MY GD  RK++L E
Sbjct: 302 SGIENYSRFFDGRQPGMRPFCLLDYFPEDYLMVIDESHVTVPQIRAMYGGDRSRKLSLVE 361

Query: 384 HGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLLDPQV 443
           +GFRLP+ +DNRPL F E++A+ PQ+++VSATPA +ELE++ GV  EQVIRPTGLLDP +
Sbjct: 362 YGFRLPAALDNRPLNFNEFEALAPQTIYVSATPAEYELEKSEGVVVEQVIRPTGLLDPVI 421

Query: 444 EIRPVEMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTL 503
           EIRP   QVDDLLDE+     DG R LVTTLTKRMAE+LT+Y+    IK RY+HS+I TL
Sbjct: 422 EIRPAINQVDDLLDEIDITIKDGGRILVTTLTKRMAEELTKYLDRLNIKTRYIHSEIKTL 481

Query: 504 ERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAA 563
           ER+EILR LRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRSE SL+QTIGRAA
Sbjct: 482 ERVEILRGLRLGEFDVLVGINLLREGLDLPEVTLVAILDADKEGFLRSEKSLIQTIGRAA 541

Query: 564 RNAEGRVIMYADRITGSMERALAETNRRRAKQIAYNEEHGITPETVKKNVEDVM------ 617
           RN +GRVIMYAD IT SME+ ++ETNRRR  QIAYN E+GITP+TV K+ E ++      
Sbjct: 542 RNDKGRVIMYADGITDSMEKTISETNRRRDIQIAYNLENGITPKTVGKSREAILEQTSVL 601

Query: 618 ----------AGLYQGDVDMNRVTAKVEKPLHGGNLETVLEGLRADMRKAAENLEFEEAA 667
                     A  Y  + +++     + + +    L+  ++  R DM+KAA++++F +AA
Sbjct: 602 DFSQKASDNKARAYVENAEISIAADPIVQYMGKAELQRAIDTTRKDMQKAAKDMDFLQAA 661

Query: 668 RLRDEVKRLE 677
           +LRDE+  LE
Sbjct: 662 KLRDEMFALE 671