Pairwise Alignments

Query, 273 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 277 a.a., Mobile element protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  235 bits (599), Expect = 9e-67
 Identities = 128/262 (48%), Positives = 162/262 (61%), Gaps = 2/262 (0%)

Query: 11  NQRRACALAGIDPRVYRRRSKRLADTE-LRVRMKELASERRRFGYRRLHMLLKREGWEVN 69
           ++RRAC LAGI    +R        T+ L  R+ ELA  RRRFGYRRLH LL+ E  +VN
Sbjct: 8   SERRACRLAGISRDAFRHAPTPTPATQTLSARLVELAQARRRFGYRRLHDLLRPESPQVN 67

Query: 70  WKKLYRLYRDEGLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLN 129
            KK+YRLYR+  L+VR+R   K     R P+   + PN+  S+DF+ D L  GRR + L 
Sbjct: 68  HKKIYRLYREAKLSVRRRKKAKFPAAQRQPLRPARHPNEVISMDFVFDQLASGRRIKCLT 127

Query: 130 VIDDFSRECLAAVVDTSISGARVARELDRIAELRGYPCLVVSDNGTELTSNAMLKWQEDR 189
           V DDF+ EC+   VD  ISGA V R L++IA  RGYP  V +DNG E TS A + W + R
Sbjct: 128 VADDFTHECVDIAVDHGISGAYVVRVLEQIACFRGYPRAVRTDNGPEFTSRAFITWAQQR 187

Query: 190 KVDWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHACRMIAAWRDDYNHHRPHSS 249
            ++   I PGKPMQNG +ESFNG+ R+ECLNEH F SL  A  +IA WR D+N  RPHSS
Sbjct: 188 GIEHILIEPGKPMQNGYIESFNGKFRDECLNEHWFTSLIQAREVIADWRRDFNEVRPHSS 247

Query: 250 LDGLTPREYHQRSREDQTLNRA 271
              + P ++    R  QT N A
Sbjct: 248 CGRIPPAQFASNHRA-QTGNNA 268