Pairwise Alignments

Query, 273 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 274 a.a., ISD1, transposase OrfB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  201 bits (512), Expect = 1e-56
 Identities = 107/257 (41%), Positives = 145/257 (56%)

Query: 2   DWAMKTKGYNQRRACALAGIDPRVYRRRSKRLADTELRVRMKELASERRRFGYRRLHMLL 61
           D+     G ++RR+CA  G+   VYR   K   D+ +   +  LA    R+G+ +L  +L
Sbjct: 3   DFIHSEHGLSERRSCAALGLSRTVYRYELKPRDDSPIIEALLGLADRYPRYGFGKLFAVL 62

Query: 62  KREGWEVNWKKLYRLYRDEGLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALED 121
           +R G+  N K++YR+Y    + +R++G ++       P+A+P   N  WS+DFM DAL  
Sbjct: 63  RRHGFRWNHKRVYRVYCLLKMNLRRKGKKRLPSRNPQPLAVPPCANVCWSIDFMHDALAS 122

Query: 122 GRRFRVLNVIDDFSRECLAAVVDTSISGARVARELDRIAELRGYPCLVVSDNGTELTSNA 181
           G+RFR  NV+DDFSRECLA  VDT++  ARV R LDRI   RG P  +  DNG EL S  
Sbjct: 123 GQRFRTFNVLDDFSRECLAIEVDTNLPAARVLRVLDRIVAWRGLPAKLRMDNGPELISVL 182

Query: 182 MLKWQEDRKVDWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHACRMIAAWRDDY 241
           +  W E   V   +I PGKP QN  +E FN   REE L+ +LF SL     +   W   Y
Sbjct: 183 LADWAEKNGVALEFIQPGKPTQNSYIERFNKTYREEVLDFYLFKSLTEVKEITENWLRQY 242

Query: 242 NHHRPHSSLDGLTPREY 258
           N  RPH SL  LTP E+
Sbjct: 243 NEERPHESLGDLTPAEF 259