Pairwise Alignments

Query, 611 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 599 a.a., ABC transporter, ATP-binding protein MsbA (RefSeq) from Shewanella amazonensis SB2B

 Score =  254 bits (650), Expect = 6e-72
 Identities = 174/595 (29%), Positives = 282/595 (47%), Gaps = 24/595 (4%)

Query: 21  VLRRLAPFMRDERPLIAGGALAMLA-----AVFAKLAEPWPLKFVIDMFVPG---RGGTE 72
           V +RL  +++  + +     +A+L      A F    +P+     ID    G    G   
Sbjct: 12  VFKRLMGYLKPMKSIFIVSVIALLVYGAVDATFIAFIQPF-----IDKGFSGVGMSGSVN 66

Query: 73  PGMPFGLTDPIMLLVLCALSIVLVMGLRATFEFTARVTFALAGARVLAKVRATLFEHLQR 132
            G   G      +L      +V +  LR    F +    +   A+++  +R  +FEH   
Sbjct: 67  MGTTSGFDSGNSVLFWAPFVVVGLFTLRGLANFVSTYGISYMSAKLIMDMRQQVFEHYLT 126

Query: 133 LPVAFHQKSRPGDLTLRLISDVGMLKETTVTAALPLAVNALVLVGMIAVMLWIDWQLALI 192
           LPV++  K   G+L  R+  D   +   + +A + +  + + ++GM+ +M +  W+L+L 
Sbjct: 127 LPVSYIDKENSGNLISRVTFDTEQIARASGSALISIVRDGVTVIGMLGLMFYNSWKLSLC 186

Query: 193 ALSPLPVLWLMTMRIGRRIQSVSRKTRKTEGAMAASASEAMSNVAIVQALGLEKAMSKDF 252
            L   P++ L+   + RR + +SR+ +   G + A   + +     V A G ++  +K F
Sbjct: 187 ILIVGPIIGLVIATVSRRFRKISRQIQSAMGGVTAVTEQMIKGHKNVLAFGGQETEAKRF 246

Query: 253 LGDNAAELKQGVQSKRLTAGLERRVDILVGVGIGLVLLFGGLSILDGRTTPGDLIVFLTY 312
              N     Q ++     A  +  + I+    +  VL       L    T G     L  
Sbjct: 247 AQVNDHNRHQNMKLAVAQAISQPTIMIIGSFALAFVLYAASFDALKSELTAGTFATVLAA 306

Query: 313 LKNTFKPVRDYAKYAARLAKATAAGERVIALLD---EDTKLTSLATPVKLPETQGGIAFE 369
           +  T +P+++  +  A   +  AA   V  LLD   E  K T     VK     G + FE
Sbjct: 307 MMATLQPIKNLTRVNAEFQRGIAACTTVFELLDTPAEHDKGTFETERVK-----GHVRFE 361

Query: 370 NVSLNLGGSE--ILKDISISIRAGERVAITGPSGSGKSTLLSLAMRLQDP-DAGAVRLDG 426
            V+    G E   L  IS  +  G+ +A+ G SGSGKST+ SL  R     + GA+ LDG
Sbjct: 362 QVAFRYEGQEGRALDGISFDVPPGKTLALVGRSGSGKSTIASLINRFYGGLEQGAIELDG 421

Query: 427 RDLRALAVEDVRDSFAFVPQDPVLFHASIARNLGIAARHEPTPDEIIAAAQLAGAHDFIL 486
            ++    ++++R   A V Q   LF+ +IA N+  A     T ++I  AA LA A +FI 
Sbjct: 422 VNVEDYRLKNLRSQVALVSQQVTLFNDTIANNIAYACPWAVTREQIEQAATLAHAMEFIS 481

Query: 487 SQPQGYDTVLAERGSTLSGGQRQRLSFTRAALRNAPIFLLDEPTTGLDATTQANLADAIW 546
             P G DT + E G  LSGGQRQR++  RA LRNAP+ +LDE T+ LD  ++  + + + 
Sbjct: 482 KLPSGLDTQVGENGVLLSGGQRQRIAIARAMLRNAPVLILDEATSALDTESEKAIQEGLE 541

Query: 547 QLTENRTLLMVTHDLHLAARADRVICLEGGRIVANGRHEDVLAQGGLYAKLWAEQ 601
            L +NRT +++ H L     AD ++ +E GRIV  G H+ +LAQ G+YAKL+  Q
Sbjct: 542 NLRQNRTSIVIAHRLSTIESADEILVIEQGRIVERGNHKSLLAQDGMYAKLYQMQ 596