Pairwise Alignments

Query, 611 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 600 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella sp. ANA-3

 Score =  251 bits (641), Expect = 6e-71
 Identities = 167/597 (27%), Positives = 298/597 (49%), Gaps = 19/597 (3%)

Query: 20  RVLRRLAPFMRDERPLIAGGALAMLAAVFAKLAEPWPLKFVIDMFVPGRGGTEPGMPFGL 79
           +V +RL  +++   P+     L+++  +   L +   + F I  F+     + P +  G+
Sbjct: 11  KVFKRLLGYLK---PMKGMFLLSVVGLIVYGLVDAAFISF-IGPFIDKGFSSAPAISNGI 66

Query: 80  TDPI--------MLLVLCALSIVLVMGLRATFEFTARVTFALAGARVLAKVRATLFEHLQ 131
             P          +L++  + ++L+  LR    F +    +   AR++  +R  +FEH  
Sbjct: 67  ALPTSQGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQQVFEHYL 126

Query: 132 RLPVAFHQKSRPGDLTLRLISDVGMLKETTVTAALPLAVNALVLVGMIAVMLWIDWQLAL 191
            LPV++  K   G+L  ++  D   +   + +A + +  + + ++GM+A+M +  W+L+L
Sbjct: 127 SLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDGVTVIGMLALMFYNSWKLSL 186

Query: 192 IALSPLPVLWLMTMRIGRRIQSVSRKTRKTEGAMAASASEAMSNVAIVQALGLEKAMSKD 251
             L   P++ L+   + RR + VS++ +   G ++A+  + +     V A G ++  +  
Sbjct: 187 CILVIGPIMGLVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGGQETETAR 246

Query: 252 FLGDNAAELKQGVQSKRLTAGLERRVDILVGVGIGLVLLFGGLSILDGRTTPGDLIVFLT 311
           F   N     Q ++     A  +  + ++    +  VL    L  +    T G     L 
Sbjct: 247 FAKVNDRNRHQNMKLAVAQAISQPLIMVIGSFALAFVLYAASLDSMKADLTAGTFATILG 306

Query: 312 YLKNTFKPVRDYAKYAARLAKATAAGERVIALLDEDTKLTSLATPVKLPETQGGIAFENV 371
            +    +P+++  +  A   +  AA   V  LLD   +  +    VK    +G + F+NV
Sbjct: 307 AMMAMLQPIKNLTRVNAEFQRGIAACTTVFELLDTLPESDTGTYTVK--RAKGNLRFDNV 364

Query: 372 SLNLGGSE--ILKDISISIRAGERVAITGPSGSGKSTLLSLAMRLQDP-DAGAVRLDGRD 428
           S +  G E   L +I   +  G+ +A+ G SGSGKST+ SL  R     ++G + LD   
Sbjct: 365 SFSYDGQERRALDNIDFEVTQGQTLALVGRSGSGKSTIASLVTRFYTGLESGDILLDDVS 424

Query: 429 LRALAVEDVRDSFAFVPQDPVLFHASIARNLGIAARHEPTPDEIIAAAQLAGAHDFILSQ 488
           +   +++ +R+  A V Q   LF+ +IA N+  A   E T ++II AA LA A +FI   
Sbjct: 425 IYDYSLKSLRNQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIQAATLAHAMEFIEQL 484

Query: 489 PQGYDTVLAERGSTLSGGQRQRLSFTRAALRNAPIFLLDEPTTGLDATTQANLADAIWQL 548
           P+G DT + E G  LSGGQRQR++  RA LR+AP+ +LDE T+ LD  ++  +   +  L
Sbjct: 485 PEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNL 544

Query: 549 TENRTLLMVTHDLHLAARADRVICLEGGRIVANGRHEDVLAQGGLYAKLWAEQMQTG 605
            +NRT +++ H L     AD+++ ++ GRIV  G H+ +L  GG+YAKL+  QMQ G
Sbjct: 545 RQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLY--QMQFG 599