Pairwise Alignments

Query, 273 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 280 a.a., ISDvu2, transposase OrfB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 78.6 bits (192), Expect = 1e-19
 Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 13/247 (5%)

Query: 24  RVYRRRSKRLADTELRVRMKELASERRRFGYRRLHMLLKRE-----GWEVNWKKLYRLYR 78
           R  + R  +  D EL   ++ +  ER+ +GYRR+   L          EVN K++YR+ R
Sbjct: 24  RTRKPRYVKAQDEELLRLIRAILDERQTYGYRRIQACLNAHLRATGQSEVNHKRVYRIMR 83

Query: 79  DEGLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLNVIDDFSREC 138
             GL + +  G KR         +    N RW  D      ++    RV  V+D   RE 
Sbjct: 84  MNGLLLTRHNG-KRPDKAHEGKIVTLHRNTRWCSDGFEIPCDNREVVRVAFVLDSCDREV 142

Query: 139 LAAVVDT-SISGARVARELDRIAELR------GYPCLVVSDNGTELTSNAMLKWQEDRKV 191
           ++ V  T  ISG+ V   +    E R       +    +SDNG+  T+   +++     +
Sbjct: 143 ISYVATTRGISGSMVRDLMLESVERRFGNAHTSHTVEWLSDNGSCYTAKETVEFASWLGL 202

Query: 192 DWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHACRMIAAWRDDYNHHRPHSSLD 251
              +     P  NG+ E+F    + + ++ ++ P      + ++ W +DYN + PH  L 
Sbjct: 203 RSCFTPVRSPESNGMAEAFVKTFKRDYVDCNICPDAPSVLKRLSEWFEDYNENAPHKGLR 262

Query: 252 GLTPREY 258
             +PR++
Sbjct: 263 MRSPRQF 269