Pairwise Alignments

Query, 103 a.a., pentapeptide repeat protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 214 a.a., Uncharacterized low-complexity proteins from Pseudomonas stutzeri RCH2

 Score = 44.7 bits (104), Expect = 6e-10
 Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 4   GVDFSHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADIS 63
           G D S+ ++ R++     L  A L GANLR ANL  A L  AD TG+ L  A L  A++ 
Sbjct: 44  GADLSNQDLRRIN-----LAGANLSGANLRHANLDLANLEKADLTGATLNRASLQQANLR 98

Query: 64  GANFT 68
            ANFT
Sbjct: 99  LANFT 103



 Score = 43.5 bits (101), Expect = 1e-09
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 10  ANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADISGA--NF 67
           AN+ + D   A LNRA L  ANLR AN T A L+     G   + A   GAD++GA   F
Sbjct: 75  ANLEKADLTGATLNRASLQQANLRLANFTNARLIAVQGWGLFAQAAQFKGADLTGAYLEF 134

Query: 68  TKTTGLTHEMLGAAIGSQD 86
            + +G   +M G+ + + D
Sbjct: 135 ARMSGA--KMHGSKLHAAD 151



 Score = 37.4 bits (85), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 19 DAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADISGANFTKTT 71
          +A L  A L   +LR  NL GA L GA+   +NL+ A L  AD++GA   + +
Sbjct: 39 NADLRGADLSNQDLRRINLAGANLSGANLRHANLDLANLEKADLTGATLNRAS 91



 Score = 36.6 bits (83), Expect = 2e-07
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query: 4   GVDFSHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADIS 63
           G D + A +       AK++ ++L  A+L    L+ A+L GAD T +NL+ A L+ A+++
Sbjct: 124 GADLTGAYLEFARMSGAKMHGSKLHAADLEMTWLSKADLKGADLTDANLQEAKLNDANLA 183

Query: 64  GANFT 68
            A  T
Sbjct: 184 DAVLT 188



 Score = 35.8 bits (81), Expect = 3e-07
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 8   SHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLE 53
           S A++   D  DA L  A+L  ANL  A LTGA    A F G+N+E
Sbjct: 158 SKADLKGADLTDANLQEAKLNDANLADAVLTGARRHYATFQGTNME 203



 Score = 35.4 bits (80), Expect = 4e-07
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 16 DAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADISGAN 66
          D   A L+   L   NL GANL+GA L  A+   +NLE A L GA ++ A+
Sbjct: 41 DLRGADLSNQDLRRINLAGANLSGANLRHANLDLANLEKADLTGATLNRAS 91



 Score = 35.4 bits (80), Expect = 4e-07
 Identities = 25/63 (39%), Positives = 31/63 (49%)

Query: 8   SHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADISGANF 67
           S A M     H A L    L  A+L+GA+LT A L  A    +NL +A+L GA    A F
Sbjct: 138 SGAKMHGSKLHAADLEMTWLSKADLKGADLTDANLQEAKLNDANLADAVLTGARRHYATF 197

Query: 68  TKT 70
             T
Sbjct: 198 QGT 200



 Score = 33.1 bits (74), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 19 DAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADISGANFTKTT 71
          D++   A L GA+L   +L    L GA+ +G+NL +A L  A++  A+ T  T
Sbjct: 34 DSQCPNADLRGADLSNQDLRRINLAGANLSGANLRHANLDLANLEKADLTGAT 86



 Score = 30.0 bits (66), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 4   GVDFSHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADIS 63
           G     A M     H +KL+ A L    L  A+L GA+L  A+   + L +A L  A ++
Sbjct: 129 GAYLEFARMSGAKMHGSKLHAADLEMTWLSKADLKGADLTDANLQEAKLNDANLADAVLT 188

Query: 64  GA 65
           GA
Sbjct: 189 GA 190



 Score = 28.9 bits (63), Expect = 3e-05
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 22  LNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADISGAN 66
           L++A L GA+L  ANL  A+L  A+   + L  A  H A   G N
Sbjct: 157 LSKADLKGADLTDANLQEAKLNDANLADAVLTGARRHYATFQGTN 201



 Score = 28.5 bits (62), Expect = 5e-05
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 20  AKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADISG 64
           A L  A L  ANL+ A L  A L  A  TG+    A   G ++ G
Sbjct: 160 ADLKGADLTDANLQEAKLNDANLADAVLTGARRHYATFQGTNMEG 204



 Score = 26.6 bits (57), Expect = 2e-04
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 35 ANLTGAELVGADFTGSNLENAILHGADISGANFTKTTGLTHEMLGAAI 82
          A+L GA+L   D    NL  A L GA++  AN         ++ GA +
Sbjct: 40 ADLRGADLSNQDLRRINLAGANLSGANLRHANLDLANLEKADLTGATL 87