Pairwise Alignments

Query, 103 a.a., pentapeptide repeat protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 181 a.a., Pentapeptide repeat (NCBI) from Rhodospirillum rubrum S1H

 Score = 47.8 bits (112), Expect = 6e-11
 Identities = 25/51 (49%), Positives = 31/51 (60%)

Query: 6   DFSHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAI 56
           DFS A +       A L RAR  GA+LR A+L+GA L GADF  +NL  A+
Sbjct: 114 DFSRARLDGASLRGADLRRARFYGADLRKADLSGARLQGADFLEANLSGAV 164



 Score = 44.3 bits (103), Expect = 7e-10
 Identities = 24/50 (48%), Positives = 31/50 (62%)

Query: 19  DAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAILHGADISGANFT 68
           +A  +RARL GA+LRGA+L  A   GAD   ++L  A L GAD   AN +
Sbjct: 112 EADFSRARLDGASLRGADLRRARFYGADLRKADLSGARLQGADFLEANLS 161



 Score = 31.6 bits (70), Expect = 5e-06
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 3   DGVDFSHANMVRVDAHDAKLNRARLIGANLRGANLTGAELVGADFT 48
           DG     A++ R   + A L +A L GA L+GA+   A L GA +T
Sbjct: 121 DGASLRGADLRRARFYGADLRKADLSGARLQGADFLEANLSGAVWT 166



 Score = 27.7 bits (60), Expect = 7e-05
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 2   ADGVDFSHANM-----VRVDAHDAKLNRARLIGANLRGANLTGAELVGADFTGSNLENAI 56
           A GVD++   M     V VD   A+L       ++L  A L  A    A F  + L  A+
Sbjct: 45  AAGVDWTRCYMDERIFVGVDLTGARLRDVTFQRSDLSEAKLVRAAAYRAKFVSARLSRAV 104

Query: 57  LHGADISGANFTK 69
           L   +   A+F++
Sbjct: 105 LDEGNFGEADFSR 117



 Score = 25.0 bits (53), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 43  VGADFTGSNLENAILHGADISGANFTKTTGLTHEMLGAAIGSQDTILPEG 92
           VG D TG+ L +     +D+S A   +      + + A +     +L EG
Sbjct: 61  VGVDLTGARLRDVTFQRSDLSEAKLVRAAAYRAKFVSARLSR--AVLDEG 108



 Score = 23.9 bits (50), Expect = 0.001
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 27 LIGANLRG---ANLTGAELVGADFTGSNLENAILHGADISGANFTKTT 71
          L+G  + G   A  T     G D+T   ++  I  G D++GA     T
Sbjct: 27 LLGLAIGGPAFAGCTDEAAAGVDWTRCYMDERIFVGVDLTGARLRDVT 74