Pairwise Alignments

Query, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 1003 a.a., excinuclease ABC subunit A from Synechococcus elongatus PCC 7942

 Score = 1006 bits (2602), Expect = 0.0
 Identities = 524/976 (53%), Positives = 676/976 (69%), Gaps = 35/976 (3%)

Query: 3   ELKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSA 62
           E  +I VRGAR+HNL+++D+D+PR++L+V TG+SGSGKSSLAFDTI+AEGQRRYVESLSA
Sbjct: 24  ETDQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSA 83

Query: 63  YARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPY 122
           YARQFL  + KPDVD I GLSPAISI+QK+TS NPRSTVGTVTEIYDY+RLLF R G P+
Sbjct: 84  YARQFLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGAPH 143

Query: 123 SPATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKV 182
            P     I  Q +  MVDR+  + + +R  +LAP++R +KG ++K    L  +GF RV++
Sbjct: 144 CPHCDRSIAPQTIDQMVDRLAELPDRSRFQILAPVVRGKKGTHKKLLSSLAAEGFVRVRI 203

Query: 183 DGAFHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADGIAILETAPT 242
           +G   +L     LDK   H I++VVDR+V K GI+ RL DS  T L  ++GIA+++  P 
Sbjct: 204 NGEVRELSDSIELDKNHAHTIEIVVDRLVQKAGIQERLVDSLTTCLRRSEGIAVIDVLPG 263

Query: 243 EG------------------------EPERH--TFSEKFACPVSGFTIPEIEPRLFSFNA 276
           +                         EP+ +   FSE FACP  G  + E+ PRLFSFN+
Sbjct: 264 DRGNVITLPVEHHSSRAADTGAEYNREPQGYELVFSENFACPEHGAVMEELSPRLFSFNS 323

Query: 277 PFGACPACDGLGVELFFDERLVVPDATLTLANGALAPWRKGKSPYFLQTINAIAKHYEFD 336
           P+GAC  C GLG    F   LVVPD  L +   A+APW +    Y+   +  +A+   F+
Sbjct: 324 PYGACSHCHGLGTLRTFSPELVVPDPNLPVY-AAIAPWSEKDHSYYFNLLCGVAEVSGFE 382

Query: 337 PKTPWKALPEKVQEVFLRGSGEEEITFRYDEGGRVYQV-SRAFEGVIPNMERRYRETDSS 395
               W+ L    Q   L GS E  I    D   R   +  R FEGVIP +ER+YRET S 
Sbjct: 383 ISDRWQDLTPDQQHAILFGSSEP-IAVETDSRFRDRHLYHRPFEGVIPILERQYRETSSE 441

Query: 396 WIREEFERYQNNRSCGTCGGYRLRPEALAVKIAGLHVGEVVQMSIREAHDWCRTV----- 450
             +++ E+Y  +++C  C G RL+PE+LAV++    + ++  +S+RE  +    +     
Sbjct: 442 VYKQKLEKYLVDQTCEVCHGLRLKPESLAVRMGPYRITDLTSVSVRECLNKIEALIGSDN 501

Query: 451 -PEHLSVQKNEIARAILKEIRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGS 509
               L+ ++ +I   +L+EI+ RL FL +VGL+YLTL R A TLSGGE+QRIRLA+QIG+
Sbjct: 502 REPLLTARQMQIGDLVLREIQARLRFLLDVGLDYLTLDRPAMTLSGGEAQRIRLATQIGA 561

Query: 510 GLTGVLYVLDEPSIGLHQRDNDRLLTTLKNLRDQGNTVIVVEHDEEAVREADYVFDIGPG 569
           GLTGVLYVLDEPSIGLHQRDNDRLL TL  LRD GNT+IVVEHDE+ +R AD++ DIGPG
Sbjct: 562 GLTGVLYVLDEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEHDEDTIRAADHLVDIGPG 621

Query: 570 AGVHGGQVVAHGTPAQIMANPASITGDYLAGRREIPVPATRRKGNKKKVTVRKATGNNLQ 629
           AGVHGG++VA G   Q++    S+TG YL+GRR I  P +RR GN +++ ++ A  NNLQ
Sbjct: 622 AGVHGGRIVAQGNLNQLLTAEESLTGAYLSGRRRIATPDSRRAGNGRRLLLQGANRNNLQ 681

Query: 630 DLTVDFPLGKFVCVTGVSGGGKSTLTIETLFKTASMRLNGARQTPAPCETIKGLEHLDKV 689
           +L V+ PLGK VC+TGVSG GKSTL  E L       L      P     +KG + +DKV
Sbjct: 682 NLDVEIPLGKLVCITGVSGSGKSTLINELLHPALEHSLGLKVPFPKGLAVLKGTKAIDKV 741

Query: 690 IDIDQRPIGRTPRSNPATYTGAFTPIRDWFAGLPEARTRGYKPGRFSFNVKGGRCEACQG 749
           I IDQ PIGRTPRSNPATYTGAF PIR  FA   EA+ RGY+PG+FSFNVKGGRCEAC G
Sbjct: 742 IVIDQSPIGRTPRSNPATYTGAFDPIRQVFAATTEAKARGYQPGQFSFNVKGGRCEACGG 801

Query: 750 DGVIKIEMHFLPDVYVECETCKGKRYNRETLEVTFKGKSIADVLDMTVEDAQEFFKAVPS 809
            GV  IEM+FLPDVYV+C+ CKG RYNRETL+V +KGK+IADVL+MTVE+A +FF+ +P 
Sbjct: 802 QGVNVIEMNFLPDVYVQCDVCKGARYNRETLQVKYKGKTIADVLNMTVEEAAQFFENIPQ 861

Query: 810 IREKMDALMRVGLGYIKVGQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHF 869
              ++  L+ VGLGY+++GQ A TLSGGEAQRVKL+ ELA+R+TG+TLY++DEPTTGL F
Sbjct: 862 ASSRLQTLVDVGLGYVRLGQPAPTLSGGEAQRVKLATELARRATGKTLYLIDEPTTGLSF 921

Query: 870 EDVRKLLEVLHELVEQGNTVVVIEHNLDVIKTADWLIDIGPEGGDGGGTLVATGTPEQVA 929
            DV KLL+V+  LV++GN++VVIEHNLDVI+ ADW+ID+GPEGGD GG +V  G PE VA
Sbjct: 922 YDVHKLLDVMQRLVDKGNSIVVIEHNLDVIRCADWIIDLGPEGGDRGGEIVVCGEPEIVA 981

Query: 930 EVAESHTGRYLKPMLA 945
              +SHTGRYL  +LA
Sbjct: 982 THNQSHTGRYLAQVLA 997