Pairwise Alignments

Query, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis JJ

 Score =  996 bits (2575), Expect = 0.0
 Identities = 511/957 (53%), Positives = 683/957 (71%), Gaps = 23/957 (2%)

Query: 4   LKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63
           +K I ++GAREHNLK+I + +PR+ L+V+TG+SGSGKS++AFDTIYAEGQRRYVESLSAY
Sbjct: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60

Query: 64  ARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYS 123
           ARQFL +M KPDVD I GLSPAI+I+QKTTSKNPRSTVGTVTEIYDY+RLL+AR+G PY 
Sbjct: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120

Query: 124 PATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKVD 183
           P   + IE+Q  + + +++   E      +L+PI+R +KG Y+K F +L  +GF R++V+
Sbjct: 121 PEHNIRIESQSPEKIAEKIEE-EFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179

Query: 184 GAFHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADGIAILETAPTE 243
           G  +  D   TL++  +HDI++V+DR+  K+   +RL ++   AL+ + G+ I+ T    
Sbjct: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIV-TGTKN 237

Query: 244 GEPERHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPACDGLGVELFFDERLVVPDAT 303
            E     +S   ACP+ G +  E++PR+FSFN+PFGAC  C GLG+++ FD  L++PD  
Sbjct: 238 NEEFEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKN 297

Query: 304 LTLANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKALPEKVQEVFLRGSGEEEITF 363
             +A+GA+A +R     Y  Q + A+A H+ F   TP K L ++  ++ + GS  E+I F
Sbjct: 298 KCIADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKIHF 356

Query: 364 RYDEGG--RVYQVSRAFEGVIPNMERRYRETDSSWIREEFERYQNNRSCGTCGGYRLRPE 421
           +   G     +  ++ +EG+IP   R Y ET S + R+E E++     C  CGG RL+ +
Sbjct: 357 KVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDK 416

Query: 422 ALAVKIAGLHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKEIRERLGFLNNVGL 481
           ALAVKI    + ++  +SI +A ++   +   L+ ++ EIA+ ++KEI+ RL FLN+VGL
Sbjct: 417 ALAVKIEDKSIIDLTDLSISKAEEFFNNLK--LTDKEYEIAKQVIKEIKSRLKFLNDVGL 474

Query: 482 EYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLTTLKNLR 541
            YLTLSR +GTLSGGE+QRIRLA+QIGS LTGVLYVLDEPSIGLHQRDN +L+ TL  LR
Sbjct: 475 GYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLR 534

Query: 542 DQGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMANPASITGDYLAGR 601
           +  NT++VVEHDE+ +  ADYV D+GPGAGVHGG VVA GTP +I  N  S+TG YL+G 
Sbjct: 535 NLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPTEISKNKDSLTGKYLSGE 594

Query: 602 REIPVPATRRKGNKKKVTVRKATGNNLQDLTVDFPLGKFVCVTGVSGGGKSTLTIETLFK 661
            +I +P  RRK +K  + +     NNL++++V+ P G F  +TGVSG GKSTL  E L+ 
Sbjct: 595 LKIEIPKNRRKSDKF-LKLSNCRQNNLKNVSVEIPTGVFNVITGVSGSGKSTLIYENLYP 653

Query: 662 TASMRLNGARQ-------------TPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPATY 708
               ++                  T   C      E +DKV+ IDQ PIGRTPRSNPATY
Sbjct: 654 ALKEKIKSEESVEELDFEDQLYENTKEKCNLEINSE-IDKVVVIDQSPIGRTPRSNPATY 712

Query: 709 TGAFTPIRDWFAGLPEARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVECE 768
           T  F  IR  FA   EA+ +GY PGRFSFNVKGGRCE CQGDGVIKIEM+FLPDV+VECE
Sbjct: 713 TKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECE 772

Query: 769 TCKGKRYNRETLEVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKVG 828
            CKG RYN ETLEV +KGKSI+DVL+M+VE+A+E FK +P I  K+  L  VGLGYIK+G
Sbjct: 773 ECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLG 832

Query: 829 QQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGNT 888
           Q +TTLSGGEAQR+KL++EL+KR+TG T+Y+LDEPTTGLHF DV+KL++VL+ LVE+GNT
Sbjct: 833 QSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNT 892

Query: 889 VVVIEHNLDVIKTADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKPMLA 945
           VVVIEHNLDVIK AD +ID+GPEGG+ GG ++ATGTPE++A+   SHTG++LK +L+
Sbjct: 893 VVVIEHNLDVIKCADHIIDLGPEGGEFGGKIIATGTPEEIAKCKLSHTGKFLKNILS 949