Pairwise Alignments

Query, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 954 a.a., excinuclease ABC subunit A from Cupriavidus basilensis FW507-4G11

 Score = 1135 bits (2937), Expect = 0.0
 Identities = 580/957 (60%), Positives = 720/957 (75%), Gaps = 22/957 (2%)

Query: 4   LKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63
           +++I +RGAR HNLK+I++D+PR++L+VITGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 1   MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 64  ARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYS 123
           ARQFL +M+KPDVD I GLSPAI+IEQK TS NPRSTVGTVTEI+DY+RLLFAR GTPY 
Sbjct: 61  ARQFLQLMEKPDVDLIEGLSPAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPYC 120

Query: 124 PATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKV- 182
           P   L ++AQ V  MVD  +A+ E T+  +LAP++ +RKGE+   F  ++ QGF R ++ 
Sbjct: 121 PDHNLALQAQSVSQMVDAALALPEDTKLMILAPVVANRKGEHSDLFDTMQAQGFVRFRIR 180

Query: 183 ---------DGAFHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADG 233
                        +++D+ P L K  +H IDVVVDR+ V+  I+ RLA+SF TAL LADG
Sbjct: 181 SGGGTTHEAPAVVYEVDALPKLKKTEKHSIDVVVDRVKVRPDIKQRLAESFETALRLADG 240

Query: 234 IAILETAPTEGEPERHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPACDGLGVELFF 293
            AI     T  E   H FS KFACP+  +++ E+EPRLFSFN P GACP+CDGLG   FF
Sbjct: 241 RAIALEIDTSQE---HGFSSKFACPICSYSLQELEPRLFSFNNPMGACPSCDGLGQITFF 297

Query: 294 DERLVVPDATLTLANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKALPEKVQEVFL 353
           D + VV    L+LA+GA+  W + ++ ++ Q + ++A +Y F+  T ++ LP +VQEV L
Sbjct: 298 DPKRVVAFPNLSLASGAIKGWDR-RNQFYFQMLQSLAAYYGFELDTAFEDLPAEVQEVVL 356

Query: 354 RGSGEEEITFRY-DEGGRVYQVSRAFEGVIPNMERRYRETDSSWIREEFERYQNNRSCGT 412
            GSG+ EI F Y +E GR      AFEG+IPN+ERRYRETDS  +REE  +YQNN++C  
Sbjct: 357 HGSGDVEIPFTYMNERGRTTVREHAFEGIIPNLERRYRETDSIAVREELAKYQNNQACPA 416

Query: 413 CGGYRLRPEALAVKIA----GLHVGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKE 468
           C G RLR EA  VK+        + E+    +R+A  +  T+  H +  K EIA  I+KE
Sbjct: 417 CHGTRLRTEARHVKLGENDQARAIYEINGWPLRDALTYFLTLDMHGA--KREIADKIVKE 474

Query: 469 IRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR 528
           I  RL FLNNVGL+YL+L R+A TLSGGE+QRIRLASQIGSGLTGV+YVLDEPSIGLHQR
Sbjct: 475 ISARLNFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQR 534

Query: 529 DNDRLLTTLKNLRDQGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMA 588
           DNDRL+ TLK+LRD GN+V+VVEHDE+ +R  DYV DIGPGAGVHGG +VA GTP QI  
Sbjct: 535 DNDRLIGTLKHLRDIGNSVLVVEHDEDMIRACDYVVDIGPGAGVHGGMIVAEGTPQQIEQ 594

Query: 589 NPASITGDYLAGRREIPVPATRRKGNKKKVT-VRKATGNNLQDLTVDFPLGKFVCVTGVS 647
           +  S+TG Y++G R I VP  R   +++K+  +  ATGNNL++++ + P+G   CVTGVS
Sbjct: 595 SANSLTGQYMSGARRIEVPKERAAPDEEKLLRIINATGNNLRNVSAEIPVGLLTCVTGVS 654

Query: 648 GGGKSTLTIETLFKTASMRLNGARQTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPAT 707
           G GKSTL  +TL+   +  L G+   PA  + I GLEH DKVI++DQ PIGRTPRSNPAT
Sbjct: 655 GSGKSTLINDTLYHAVARHLYGSTAEPAAHDRIDGLEHFDKVINVDQSPIGRTPRSNPAT 714

Query: 708 YTGAFTPIRDWFAGLPEARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVEC 767
           YTG FTPIR+ FAG+P A+ RGY PGRFSFNVKGGRCEACQGDGVIK+EMHFLPDVYV C
Sbjct: 715 YTGLFTPIRELFAGVPSAKERGYDPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPC 774

Query: 768 ETCKGKRYNRETLEVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKV 827
           + C GKRYNRETLEV +KGK+I +VLDMTVE A EFF AVP +R K+  L+ VGLGYI++
Sbjct: 775 DVCHGKRYNRETLEVLYKGKNIHEVLDMTVEHAHEFFLAVPVVRRKLKTLLDVGLGYIRL 834

Query: 828 GQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGN 887
           GQ ATTLSGGEAQRVKLS EL+KR TGRTLYILDEPTTGLHF D+  LL+V+H+L +QGN
Sbjct: 835 GQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIELLLKVIHKLRDQGN 894

Query: 888 TVVVIEHNLDVIKTADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKPML 944
           TVV+IEHNLDVIKTADWL+D+GPEGG GGG ++A GTPE VA    S TG+YL P+L
Sbjct: 895 TVVIIEHNLDVIKTADWLLDMGPEGGAGGGQVIAKGTPETVAASRASFTGKYLAPLL 951



 Score = 58.2 bits (139), Expect = 3e-12
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 15/120 (12%)

Query: 3   ELKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSA 62
           E K + +  A  +NL+++  +IP   L  +TG+SGSGKS+L  DT+Y            A
Sbjct: 621 EEKLLRIINATGNNLRNVSAEIPVGLLTCVTGVSGSGKSTLINDTLY-----------HA 669

Query: 63  YARQFLDMMQKPDV-DHISGL---SPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARV 118
            AR       +P   D I GL      I+++Q    + PRS   T T ++  +R LFA V
Sbjct: 670 VARHLYGSTAEPAAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGV 729