Pairwise Alignments

Query, 953 a.a., excinuclease ABC, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 954 a.a., excinuclease ABC subunit UvrA from Ralstonia sp. UNC404CL21Col

 Score = 1131 bits (2925), Expect = 0.0
 Identities = 569/957 (59%), Positives = 723/957 (75%), Gaps = 22/957 (2%)

Query: 4   LKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63
           + +I++RGAR HNLK+I++D+PR++L+VITGLSGSGKSSLAFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDEIKIRGARTHNLKNINLDLPRNQLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 64  ARQFLDMMQKPDVDHISGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGTPYS 123
           ARQFL +M+KPDVD I GLSPAISIEQK TS NPRSTVGTVTEI+DY+RLL+AR GTPY 
Sbjct: 61  ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYC 120

Query: 124 PATGLPIEAQQVQDMVDRVMAMEEGTRAYLLAPIIRDRKGEYRKEFLELRKQGFQRVKV- 182
           P  G P+EAQ V  MVD V+A+   T+  +LAP++ +RKGE+   F  ++ QGF R ++ 
Sbjct: 121 PDHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVANRKGEHVDLFEAMQAQGFVRFRIR 180

Query: 183 ---------DGAFHDLDSPPTLDKKFRHDIDVVVDRIVVKEGIETRLADSFRTALDLADG 233
                    +   +++D+ P L K  +H I+VVVDR+ V   ++ RLA+SF TAL LADG
Sbjct: 181 SGGGTAHEAEAKVYEVDNLPKLKKNDKHSIEVVVDRVKVNPELKQRLAESFETALRLADG 240

Query: 234 IAILETAPTEGEPERHTFSEKFACPVSGFTIPEIEPRLFSFNAPFGACPACDGLGVELFF 293
            AI     T  E   H FS KFACP+  +++ E+EPRLFSFN P GACP CDGLG   FF
Sbjct: 241 RAIALEMDTGKE---HGFSSKFACPICSYSLQELEPRLFSFNNPMGACPHCDGLGQITFF 297

Query: 294 DERLVVPDATLTLANGALAPWRKGKSPYFLQTINAIAKHYEFDPKTPWKALPEKVQEVFL 353
           D + VV    L+LA+GA+  W + ++ ++ Q + ++A  Y+ D    ++ LP ++Q++ L
Sbjct: 298 DPKRVVAFPNLSLASGAIKGWDR-RNQFYFQMLQSLAAFYDVDIDVAFEDLPAEIQQIVL 356

Query: 354 RGSGEEEITFRY-DEGGRVYQVSRAFEGVIPNMERRYRETDSSWIREEFERYQNNRSCGT 412
            GSG+++I F Y +E G+      AFEG+IPN+ERRY+ETDS  +REE  +YQNN+ C  
Sbjct: 357 HGSGKQQIPFTYINERGKTTVREHAFEGIIPNLERRYKETDSIAVREELAKYQNNQPCPE 416

Query: 413 CGGYRLRPEALAVKIAGLH----VGEVVQMSIREAHDWCRTVPEHLSVQKNEIARAILKE 468
           C G RLR EA  VKI        + E+    +R+A  +  T+  H +  K EIA  I+KE
Sbjct: 417 CHGTRLRREARFVKIGEADQARGIYEINGWPLRDALTYFLTLNMHGA--KREIADKIVKE 474

Query: 469 IRERLGFLNNVGLEYLTLSRNAGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR 528
           I  RL FLNNVGL+YL+L R+A TLSGGE+QRIRLASQIGSGLTGV+YVLDEPSIGLHQR
Sbjct: 475 ITARLNFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQR 534

Query: 529 DNDRLLTTLKNLRDQGNTVIVVEHDEEAVREADYVFDIGPGAGVHGGQVVAHGTPAQIMA 588
           DNDRL+ TLK+LRD GN+V+VVEHDE+ +R +DYV DIGPGAGVHGGQ++A GTP Q+  
Sbjct: 535 DNDRLIGTLKHLRDLGNSVLVVEHDEDMIRASDYVVDIGPGAGVHGGQIIAEGTPKQVEQ 594

Query: 589 NPASITGDYLAGRREIPVPATRRKGNKKK-VTVRKATGNNLQDLTVDFPLGKFVCVTGVS 647
           +PAS+TGDYL+G+R I VP  R   ++++ + +  A+GNNL++++ D P+G   C+TGVS
Sbjct: 595 SPASLTGDYLSGKRRIEVPKQRTAPDEERWLRIINASGNNLKNVSADIPIGLLTCITGVS 654

Query: 648 GGGKSTLTIETLFKTASMRLNGARQTPAPCETIKGLEHLDKVIDIDQRPIGRTPRSNPAT 707
           G GKSTL  +TL+   +  L G+   PA  + I GLEH DKVI++DQ PIGRTPRSNPAT
Sbjct: 655 GSGKSTLINDTLYHAVARHLYGSTPEPAAHDRIDGLEHFDKVINVDQSPIGRTPRSNPAT 714

Query: 708 YTGAFTPIRDWFAGLPEARTRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVEC 767
           YTG FTPIR+ FAG+P A+ RGY PGRFSFNVKGGRCEACQGDGV+K+EMHFLPDVYV C
Sbjct: 715 YTGLFTPIRELFAGVPSAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPC 774

Query: 768 ETCKGKRYNRETLEVTFKGKSIADVLDMTVEDAQEFFKAVPSIREKMDALMRVGLGYIKV 827
           + C GKRYNRETLEV +KGK+I +VL+MTVE A EFF  VP +R K+  L+ VGLGYI++
Sbjct: 775 DVCHGKRYNRETLEVLYKGKNITEVLEMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRL 834

Query: 828 GQQATTLSGGEAQRVKLSKELAKRSTGRTLYILDEPTTGLHFEDVRKLLEVLHELVEQGN 887
           GQ ATTLSGGEAQRVKLS EL+KR TGRTLYILDEPTTGLHF D+  LL+V+++L + GN
Sbjct: 835 GQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIELLLKVIYKLRDHGN 894

Query: 888 TVVVIEHNLDVIKTADWLIDIGPEGGDGGGTLVATGTPEQVAEVAESHTGRYLKPML 944
           T+V+IEHNLDVIKTADWL+D+GPEGG GGG ++A GTPE VA+   S TG+YL P+L
Sbjct: 895 TIVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEDVAKSKASFTGKYLAPLL 951



 Score = 59.7 bits (143), Expect = 9e-13
 Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 15/120 (12%)

Query: 3   ELKKIEVRGAREHNLKSIDVDIPRDRLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSA 62
           E + + +  A  +NLK++  DIP   L  ITG+SGSGKS+L  DT+Y            A
Sbjct: 621 EERWLRIINASGNNLKNVSADIPIGLLTCITGVSGSGKSTLINDTLY-----------HA 669

Query: 63  YARQFLDMMQKPDV-DHISGL---SPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARV 118
            AR       +P   D I GL      I+++Q    + PRS   T T ++  +R LFA V
Sbjct: 670 VARHLYGSTPEPAAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGV 729