Pairwise Alignments

Query, 333 a.a., putative TIM-barrel protein, nifR3 family (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 336 a.a., tRNA dihydrouridine synthase B (EC 1.-.-.-) from Pseudomonas fluorescens FW300-N1B4

 Score =  250 bits (638), Expect = 4e-71
 Identities = 138/291 (47%), Positives = 177/291 (60%)

Query: 3   VLLAEQPLANPVLLAPMAGITDLPFRNVVSRFGAGLVVSEMVASQEMVQAKASVRARAEL 62
           V +    L N ++LAPMAG+TD PFR +  R GAGLVVSEMV S   +      R R   
Sbjct: 4   VRIGPYTLHNGLILAPMAGVTDQPFRQLCKRLGAGLVVSEMVTSDMSLWNTRKSRMRMIH 63

Query: 63  GFGAQATAVQLAGREAYWMGEAARYVADQGARVIDINMGCPAKKVVNGASGSALMRDLDH 122
               +  +VQ+AG +A  + +AAR   + GA++IDINMGCPAKKV N A+GSAL++D   
Sbjct: 64  EGDPEPRSVQIAGGDAQMLADAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDEAL 123

Query: 123 ALTLIDAVVAAVDVPVTLKTRLGWDDDCLNAPDLARRAEAAGIAMVTIHGRTRCQFYKGA 182
              ++ AVVAAVDVPVTLK R GWD    N   +A+ AE AGI  + +HGRTR   Y G 
Sbjct: 124 VTEILQAVVAAVDVPVTLKIRTGWDRANKNGLTVAKIAEQAGITALAVHGRTRADLYTGE 183

Query: 183 ADWTAIGRVKRAVSIPVIANGDIVDTAAAAQARAASGADGLMVGRGAQGRPWRLAEIAAA 242
           A++  I  +K+AVSIPV ANGDI     A     A+GADGL+VGR AQG+PW   EI   
Sbjct: 184 AEYDTIAAIKQAVSIPVFANGDIDSPEKARYVLDATGADGLLVGRAAQGQPWIFREIDHY 243

Query: 243 LYGAPAPDIPSGDALVDLVLAHFEAMLAFYGPELGLRTARKHLGWYMEARP 293
           L        P    +  ++L H  A+ AFYG  +G+R ARKH+GWY+   P
Sbjct: 244 LRTGEKLPAPELIEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATLP 294