Pairwise Alignments

Query, 333 a.a., putative TIM-barrel protein, nifR3 family (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 348 a.a., tRNA dihydrouridine synthase B (EC 1.-.-.-) from Acidovorax sp. GW101-3H11

 Score =  242 bits (618), Expect = 9e-69
 Identities = 142/309 (45%), Positives = 183/309 (59%), Gaps = 7/309 (2%)

Query: 9   PLANPVLLAPMAGITDLPFRNVVSRFGAGLVVSEMVASQEMVQAKASVRARAELGFGAQA 68
           PLAN + +APMAG+TD PFR +    GAG  VSEMV S++ +        RA        
Sbjct: 7   PLANRLFVAPMAGVTDRPFRQLCKALGAGYAVSEMVTSRKDLWNSLKTSRRANHDGEPGP 66

Query: 69  TAVQLAGREAYWMGEAARYVADQGARVIDINMGCPAKKVVNGASGSALMRDLDHALTLID 128
            AVQ+AG +A  M EAA Y  ++GA++IDINMGCPAKKV N  +GSALM++   A+ +  
Sbjct: 67  IAVQIAGTDAPMMAEAAVYNVERGAQIIDINMGCPAKKVCNKWAGSALMQNEALAVEIAA 126

Query: 129 AVVAAV---DVPVTLKTRLGWDDDCLNAPDLARRAEAAGIAMVTIHGRTRCQFYKGAADW 185
           AVV A    +VPVTLK R GW  +  NA  LAR+ E+ GI M+T+HGRTR Q YKG A++
Sbjct: 127 AVVEACAPFNVPVTLKMRTGWCQEHKNAVQLARQFESVGIQMLTVHGRTREQGYKGHAEY 186

Query: 186 TAIGRVKRAVSIPVIANGDIVDTAAAAQARAASGADGLMVGRGAQGRPWRLAEIAAALYG 245
             I  VK AV +PV+ANGDI     A    AA+GAD +M+GR AQGRPW   EI   L  
Sbjct: 187 DTIAAVKAAVKVPVVANGDITSPEKARDVLAATGADAIMIGRAAQGRPWIFREIGHFLAT 246

Query: 246 APAPDIPSGDALVDLVLAHFEAMLAFYGPELGLRTARKHLGWYMEARPDGFSPPKSLRRA 305
                 P    +  L+L H     + YG   G+R+ARKH+ WY+ A P G    ++ R+ 
Sbjct: 247 GEHLAPPLVAEVRRLLLDHLHDHYSLYGELTGVRSARKHIAWYLRALPGG----EAFRQH 302

Query: 306 ILTATDPAT 314
           I T  D  T
Sbjct: 303 INTIEDCTT 311