Pairwise Alignments

Query, 493 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  313 bits (803), Expect = 7e-90
 Identities = 182/424 (42%), Positives = 250/424 (58%), Gaps = 26/424 (6%)

Query: 4   FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63
           FS L L   + KA+SE GYDTP+PIQA+AIP  L G+DV+  AQTGTGKTA FTLP++ +
Sbjct: 3   FSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62

Query: 64  LRKG-RARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDK 122
           L KG +A++   R+LVL PTRELAAQV E+ + Y K+  L  A++ GGV    Q   +  
Sbjct: 63  LAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRH 122

Query: 123 GVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQTL 182
           GVDVL+ATPGRLLD  ++  +    ++++V+DEADRMLDMGFI DI+KI  L P  RQ L
Sbjct: 123 GVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNL 182

Query: 183 FFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKREM 242
            FSAT + EI  +    +++P  + V  ++  + T+ Q +     +         +K  +
Sbjct: 183 MFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKT---------QKSAL 233

Query: 243 LRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFRD 302
           L  LI++E    +  ++F   K   + +AKSLI+    AA IHG+  Q  RTK L  F+ 
Sbjct: 234 LIQLIKQE--NWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKS 291

Query: 303 GTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLAVPAD 362
           G ++ LVA+D+AARGLDI  +  V NFD+P+  EDYVHRIGRTGRAG  G  + L    +
Sbjct: 292 GEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEE 351

Query: 363 DKLLAAIEDLVKLEIPRIEAPGISA----------PQGGRSKDEERPEPEKRERRSRRRT 412
            KLL  IE L+   + R E  G S           PQG     + + +     R+ R   
Sbjct: 352 IKLLKDIERLINRVLERQEVEGFSPVHALPETTLNPQG----KDTKVKAVANHRKHRSAG 407

Query: 413 KPEP 416
           KP P
Sbjct: 408 KPAP 411