Pairwise Alignments

Query, 493 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 465 a.a., Superfamily II DNA and RNA helicases from Sphingomonas koreensis DSMZ 15582

 Score =  437 bits (1124), Expect = e-127
 Identities = 261/484 (53%), Positives = 319/484 (65%), Gaps = 31/484 (6%)

Query: 4   FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63
           F+DL L  ++LKA++EAGY  PTPIQ +AIP  L  RD++GIAQTGTGKTASF LPMI +
Sbjct: 3   FADLGLSDELLKAVTEAGYTDPTPIQRQAIPSVLMMRDLIGIAQTGTGKTASFVLPMIDV 62

Query: 64  LRKGRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDKG 123
           L +GR+RARMPRSL+L PTRELAAQVAENF+ Y  H KL+ ALLIGGV   +Q   ++KG
Sbjct: 63  LAEGRSRARMPRSLILEPTRELAAQVAENFEKYGTHHKLSMALLIGGVQMGDQVKALEKG 122

Query: 124 VDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQTLF 183
           VDVLIATPGRL+D FERGK++LT   ++V+DEADRMLDMGFIPDIE I    P  RQTL 
Sbjct: 123 VDVLIATPGRLMDLFERGKILLTGCNLLVIDEADRMLDMGFIPDIENICTKLPANRQTLL 182

Query: 184 FSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKREML 243
           FSATM P I+++ + FLSNP  +EVAR ++T+  ITQ LV         A +  EKR  L
Sbjct: 183 FSATMPPPIKKLADKFLSNPKTIEVARPASTNTNITQWLVPV-------ANSAFEKRRTL 235

Query: 244 RALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFRDG 303
           R LIE +  G   AIIFCNRK  V  + KSL KHGY +A IHGD++QS R   LD+F+ G
Sbjct: 236 RRLIEDQ--GVATAIIFCNRKTTVRELNKSLKKHGYRSAEIHGDMDQSSRIAELDRFKAG 293

Query: 304 TLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLAVPADD 363
            +  LVASDVAARGLDI  VSHVFNFD P H +DYVHRIGRTGRAG  GT   L   AD 
Sbjct: 294 EVNILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGATGTAFTLVSSADA 353

Query: 364 KLLAAIEDLVKLEIPRIEAPGISAPQGGRSKDEERPEPEKRERRSRRRTKPEPAKANAPA 423
           + +  IE L   +I R+ A  +          E+ P  EK+  R R+ +KP   KA+AP 
Sbjct: 354 EAIDNIEKLQGQKIDRMGALPV----------EDVPAEEKK-GRGRKGSKP---KADAPK 399

Query: 424 QAPVAAQAETAVAEAEEAPIPDAVLPAARKTETPQRGR-KGRARDT---GPKQVGLGDHV 479
               AA  +    E  E   P+A  P  R+ + P+R R + R RD+   GP   G    V
Sbjct: 400 PDKKAAD-KARSDEPREERRPEAREP--RRDDRPRRDRDRDRRRDSFDDGPDD-GWNGPV 455

Query: 480 PDFL 483
           PDFL
Sbjct: 456 PDFL 459