Pairwise Alignments

Query, 493 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 562 a.a., RNA helicase from Cupriavidus basilensis FW507-4G11

 Score =  335 bits (859), Expect = 2e-96
 Identities = 208/473 (43%), Positives = 282/473 (59%), Gaps = 34/473 (7%)

Query: 4   FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63
           FS+L L  K+++A++E GY TPTPIQA+AIP  L+G D+L  AQTGTGKTA FTLP++ +
Sbjct: 3   FSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLQL 62

Query: 64  LRK---GRARAR---MP-RSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQ 116
           L +   GR  AR   +P R+LVL PTRELAAQV E+   Y K+ KL   ++ GGV    Q
Sbjct: 63  LSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGINPQ 122

Query: 117 DLLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTP 176
              + +GVD+++ATPGRLLDH  +  + L  V+++V+DEADRMLDMGFI DI KI  + P
Sbjct: 123 IEQLKRGVDIVVATPGRLLDHLSQRTIDLAHVEMLVLDEADRMLDMGFIHDIRKILNVLP 182

Query: 177 FTRQTLFFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAF 236
             RQ L FSAT + EI  + +  L NPA +EVAR++TT+ET+ Q   +  P  R+R    
Sbjct: 183 PKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQ---RVYPVDRER---- 235

Query: 237 KEKREMLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKT 296
             KRE+L  L+ RE D     ++F   K   + +A+ L K G  A  IHG+  QS RT+ 
Sbjct: 236 --KRELLAHLV-REND-WHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTRA 291

Query: 297 LDQFRDGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLM 356
           L +F+ GTL+ LVA+D+AARG+DI  + HV N+D+P+  EDYVHRIGRTGRAG +G  + 
Sbjct: 292 LTEFKAGTLRLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAIS 351

Query: 357 LAVPADDKLLAAIEDLVKLEIPRIEAPGISAPQGGRSKDEERP-EPEKRERRSRRRTKPE 415
           L    +  L+  IE L+K +I +   PG          D   P EP ++ R++R + +  
Sbjct: 352 LVCVDEISLMRDIERLIKRQIEQTILPGFEV-------DPSIPAEPIQKGRQARGQGQGN 404

Query: 416 PAKANAPAQAPVAAQAETAVAEAEEAPIPDAVLPAARKTETPQ-RGRKGRARD 467
                   QAP   Q          AP  DA     R    PQ RG+   A D
Sbjct: 405 -GGGRGRGQAPAGGQPR------GRAPAADAGERQQRPARAPQGRGQAPAAAD 450