Pairwise Alignments

Query, 493 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 515 a.a., RNA helicase from Burkholderia phytofirmans PsJN

 Score =  323 bits (828), Expect = 9e-93
 Identities = 196/483 (40%), Positives = 275/483 (56%), Gaps = 34/483 (7%)

Query: 4   FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63
           F  L L   +++A+ E GY TPTPIQ +AIP  L G D+L  AQTGTGKTA FTLP++  
Sbjct: 3   FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62

Query: 64  LRKGRARA-----RMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDL 118
           L    A       R  R+L+L PTRELAAQV E+   Y K+ KL   ++ GGV    Q  
Sbjct: 63  LNTMPAVTTGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122

Query: 119 LIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFT 178
            +  GVD+++ATPGRLLDH ++  + L+ ++++V+DEADRMLDMGFI DI+++    P  
Sbjct: 123 ALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK 182

Query: 179 RQTLFFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKE 238
           RQ L FSAT + EI+ + +  L +PA +EVAR++TT+ET+ Q   +  P  RD+      
Sbjct: 183 RQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQ---KIHPVDRDK------ 233

Query: 239 KREMLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLD 298
           KRE+L  LI++        ++F   K   + +A+ L K    A  IHG+  QS RT+ L 
Sbjct: 234 KRELLTHLIKQH--NWFQVLVFTRTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALA 291

Query: 299 QFRDGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLA 358
           +F+DGTL+ LVA+D+AARG+DI  + HV N+D+P+  EDYVHRIGRTGRAG  G  + L 
Sbjct: 292 EFKDGTLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLV 351

Query: 359 VPADDKLLAAIEDLVKLEIPRIEAPGISAPQGGRSKDEERPEPEKRE--------RRSRR 410
              + +LL  IE L+K  +P+          G       +PEP  R          RS R
Sbjct: 352 CVDELQLLKDIEKLIKRPVPQ------EVIAGFEPDPTAKPEPILRRGQGGGGGGGRSPR 405

Query: 411 RTKPEPAKANAPAQAPVAAQAETAVAEAEEAPIPDAVLPAARKTETPQRGRKGRARDTGP 470
           + +  P +  A +  P A ++    A  ++ P P    PA       Q  R G+  D  P
Sbjct: 406 QGQGAPKRDGAGSAKP-AQRSGQRPANGQQQPKPQGAKPAG---NGGQPRRDGQRHDDRP 461

Query: 471 KQV 473
           + V
Sbjct: 462 RAV 464