Pairwise Alignments

Query, 383 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 384 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI) from Rhodospirillum rubrum S1H

 Score =  531 bits (1367), Expect = e-155
 Identities = 262/379 (69%), Positives = 315/379 (83%), Gaps = 5/379 (1%)

Query: 5   AIRPWRNIYRRKSRQIHVGPVPIGGDAPIAVQTMTNTLTTDIPGTIAQVQAAADAGADIV 64
           ++R +R+I RR SR+I VG V +GGDAP++VQTMTNTLTTD+  T+AQ++ A +AGADIV
Sbjct: 2   SVRTYRDISRRVSRKIRVGSVFVGGDAPVSVQTMTNTLTTDVAATVAQIRRAQEAGADIV 61

Query: 65  RVSVPDVDSSRALKEIVRESPVPIVADIHFHYKRGIEAAEAGAACLRINPGNIGDEKRVK 124
           RVS PD +S+ ALK I+ +  VPIVADIHFHYKR IEAAEAGAACLRINPGNIG  +RV+
Sbjct: 62  RVSCPDEESTAALKAIISQVEVPIVADIHFHYKRAIEAAEAGAACLRINPGNIGSAERVR 121

Query: 125 EVIKAARDNNCSMRIGVNAGSLEKHLLDKYAEPCPEAMVESALDHIKILQDNDFHEFKIS 184
           EV++AA+D+ CSMRIGVNAGSLEK LL+KY EPCPEAMVESAL H +IL+DNDF EFKIS
Sbjct: 122 EVVRAAKDHGCSMRIGVNAGSLEKELLEKYGEPCPEAMVESALSHARILEDNDFTEFKIS 181

Query: 185 CKASDVFLSAAAYQALADATDAPLHLGITEAGGLMSGTIKSAIGLGNLLWMGIGDTIRVS 244
            KASD FL+ AAY+ALA+A D PLHLGITEAGGL  GT+KSAIG+G++LW GIGDTIRVS
Sbjct: 182 VKASDAFLAVAAYKALAEACDYPLHLGITEAGGLRGGTVKSAIGIGSMLWAGIGDTIRVS 241

Query: 245 LSADPVEEIKVGYDILKSLGLRHRGVNVISCPSCARQGFDVIKTVEALEQRLEHIKTPMS 304
           LSA P EE+KVG++ILKSL LRHRGV V+SCPSCARQGFDVIKTVE LE RL HI+TP++
Sbjct: 242 LSAQPEEEVKVGFEILKSLNLRHRGVRVVSCPSCARQGFDVIKTVEVLESRLSHIQTPIT 301

Query: 305 LSIIGCVVNGPGEALMTDVGFTGGG-----AGSGMVYLAGKQSHKMSNEQMIDHIVEQVE 359
           LSIIGCVVNGPGEA  TD+G TGGG          VY++G   H ++NE M+DH+V  VE
Sbjct: 302 LSIIGCVVNGPGEARETDIGLTGGGNLAKEGALNKVYVSGIPDHTINNEAMVDHLVALVE 361

Query: 360 KRAAELDAIEAAEAAQDAA 378
           K+AAE++A+EAA  A++ A
Sbjct: 362 KKAAEIEALEAARKAKEPA 380