Pairwise Alignments

Query, 383 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 407 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Bifidobacterium breve UCC2003

 Score =  341 bits (875), Expect = 2e-98
 Identities = 177/355 (49%), Positives = 236/355 (66%), Gaps = 2/355 (0%)

Query: 14  RRKSRQIHVGPVPIGGDAPIAVQTMTNTLTTDIPGTIAQVQAAADAGADIVRVSVPDVDS 73
           RRKS +I VG VP+GG API+VQ+MTNTLT ++P T+ Q+     AG DIVRV+VP  D 
Sbjct: 33  RRKSHRIMVGSVPVGGGAPISVQSMTNTLTANVPATLQQIAELTAAGCDIVRVAVPSQDD 92

Query: 74  SRALKEIVRESPVPIVADIHFHYKRGIEAAEAGAACLRINPGNIGDEKRV-KEVIKAARD 132
           + AL EI R+SPVPI+ADIHF  K   +A +AG A +R+NPGNI     V   + KAA D
Sbjct: 93  ADALPEICRKSPVPIIADIHFQSKYVFQAIDAGCAAVRVNPGNIRKFNEVGPSICKAATD 152

Query: 133 NNCSMRIGVNAGSLEKHLLDKYAEPCPEAMVESALDHIKILQDNDFHEFKISCKASDVFL 192
              S+RIGVNAGSL+K L  KY  P PEA+V SAL    + +D  FH+FKIS K  DV  
Sbjct: 153 AGISLRIGVNAGSLDKELYAKYGGPTPEALVASALKEAHMFEDVGFHDFKISVKHHDVIT 212

Query: 193 SAAAYQALADATDAPLHLGITEAGGLMSGTIKSAIGLGNLLWMGIGDTIRVSLSADPVEE 252
               Y+ LA   D PLHLG+TEAG    GTIKS +  G LL  GIGDTIRVSLSA PVEE
Sbjct: 213 MVETYRLLASKGDWPLHLGVTEAGPAWQGTIKSCLAFGALLAEGIGDTIRVSLSAPPVEE 272

Query: 253 IKVGYDILKSLGLRHRGVNVISCPSCARQGFDVIKTVEALEQRLEHIKTPMSLSIIGCVV 312
           +KVG  +L+ +GLR R  ++ISCPSC R   DVI+   A+ + L+ +  P+ ++++GC+V
Sbjct: 273 VKVGCKLLEYMGLRPRKFDIISCPSCGRAQVDVIQLASAVTEGLKDVTAPIRVAVMGCIV 332

Query: 313 NGPGEALMTDVGFTGGGAGSGMVYLAGKQSHKMSNEQMIDHIVEQVEKRAAELDA 367
           NGPGEA   D+G   G  G G +++ GK    +  +Q++D ++ + ++ AA+++A
Sbjct: 333 NGPGEAREADLGVASGN-GKGQIFIKGKVIETVPEDQIVDTLLTKAQEIAAQMEA 386