Pairwise Alignments

Query, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 277 a.a., Mobile element protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  228 bits (580), Expect = 1e-64
 Identities = 118/256 (46%), Positives = 155/256 (60%), Gaps = 1/256 (0%)

Query: 6   EVHGVSQRRACKALAVDRSSVRYRSV-RPDDAEARAAMKAVAAERRRFGYRRIHVMLERQ 64
           E+  +S+RRAC+   + R + R+     P      A +  +A  RRRFGYRR+H +L  +
Sbjct: 3   ELTSISERRACRLAGISRDAFRHAPTPTPATQTLSARLVELAQARRRFGYRRLHDLLRPE 62

Query: 65  GIMMNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALTDGRR 124
              +N KK+ RLYRE KL VRRR   K     R P+     PN+  S+DFV D L  GRR
Sbjct: 63  SPQVNHKKIYRLYREAKLSVRRRKKAKFPAAQRQPLRPARHPNEVISMDFVFDQLASGRR 122

Query: 125 FRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSVAVLS 184
            + L V DD++ EC+ +  D  +SG  VVR L+ +   RG P  V +DNG E TS A ++
Sbjct: 123 IKCLTVADDFTHECVDIAVDHGISGAYVVRVLEQIACFRGYPRAVRTDNGPEFTSRAFIT 182

Query: 185 WCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHDYNHH 244
           W Q+ GIE   I PGKPMQNG++ESFNG+FRDE LNE  F+SL  ARE I  W+ D+N  
Sbjct: 183 WAQQRGIEHILIEPGKPMQNGYIESFNGKFRDECLNEHWFTSLIQAREVIADWRRDFNEV 242

Query: 245 RPHSGLGNIPPVEFVA 260
           RPHS  G IPP +F +
Sbjct: 243 RPHSSCGRIPPAQFAS 258