Pairwise Alignments

Query, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 271 a.a., ISSod2, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  153 bits (387), Expect = 3e-42
 Identities = 87/256 (33%), Positives = 131/256 (51%), Gaps = 2/256 (0%)

Query: 3   HVVEVHGVSQRRACKALAVDRSSVRYRSVRPDD-AEARAAMKAVAAERRRFGYRRIHVML 61
           H V    +S R AC A  +  +  RYR V  D+ AE    +  +  +   +G+ +    L
Sbjct: 13  HAVANRKISIRLACAAFCISETCYRYRRVNDDENAEIAEFLVELTEKESDWGFGQCFNYL 72

Query: 62  ER-QGIMMNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALT 120
              +G   N K++ R+Y E  L +R +  R+       P+  P   NQ WS+DF+ D L+
Sbjct: 73  RNVKGFAWNHKRVYRIYCELALNLRIKPRRRLKRNAPEPLKEPTKANQVWSIDFMHDQLS 132

Query: 121 DGRRFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSV 180
           DGR +R+  V+DD+ RE LA+ A  SL  +RV+R L+ L+  R +P  +  DNG E  S 
Sbjct: 133 DGRSYRLFNVIDDFKREGLAIEAGFSLPTMRVIRTLNQLLEGRTKPIAIRCDNGPEFISH 192

Query: 181 AVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHD 240
               W ++  I   YI PGKP QN ++E  N   R   +++ LF +L + ++    W   
Sbjct: 193 EFTEWAKKHEIRIDYIQPGKPQQNAYIERHNKTIRYSWVSKHLFDTLEEVQDYATKWLWF 252

Query: 241 YNHHRPHSGLGNIPPV 256
           YNH RPH   G  PP+
Sbjct: 253 YNHERPHKANGGKPPL 268