Pairwise Alignments

Query, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 280 a.a., ISDvu2, transposase OrfB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 75.9 bits (185), Expect = 9e-19
 Identities = 67/271 (24%), Positives = 111/271 (40%), Gaps = 13/271 (4%)

Query: 1   MAHVVEVHGVSQRRACKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVM 60
           M  V +   VS+ R  + L     + + R V+  D E    ++A+  ER+ +GYRRI   
Sbjct: 1   MKRVADSLQVSRSRLAERLDGPHRTRKPRYVKAQDEELLRLIRAILDERQTYGYRRIQAC 60

Query: 61  LERQ-----GIMMNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFV 115
           L           +N K++ R+ R   L + R  G KR        +V    N  W  D  
Sbjct: 61  LNAHLRATGQSEVNHKRVYRIMRMNGLLLTRHNG-KRPDKAHEGKIVTLHRNTRWCSDGF 119

Query: 116 SDALTDGRRFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRR-------GQPAM 168
                +    RV  V+D   RE ++ VA T      +VR+L    + R            
Sbjct: 120 EIPCDNREVVRVAFVLDSCDREVISYVATTRGISGSMVRDLMLESVERRFGNAHTSHTVE 179

Query: 169 VVSDNGTELTSVAVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLA 228
            +SDNG+  T+   + +    G+   +     P  NG  E+F   F+ + ++ ++     
Sbjct: 180 WLSDNGSCYTAKETVEFASWLGLRSCFTPVRSPESNGMAEAFVKTFKRDYVDCNICPDAP 239

Query: 229 DAREQIRAWQHDYNHHRPHSGLGNIPPVEFV 259
              +++  W  DYN + PH GL    P +F+
Sbjct: 240 SVLKRLSEWFEDYNENAPHKGLRMRSPRQFI 270