Pairwise Alignments

Query, 396 a.a., efflux transporter, RND family, MFP subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 370 a.a., secretion protein HlyD (RefSeq) from Shewanella amazonensis SB2B

 Score = 94.0 bits (232), Expect = 6e-24
 Identities = 95/359 (26%), Positives = 163/359 (45%), Gaps = 47/359 (13%)

Query: 26  FAQERPAAVVTETVE-ERALAETLPVFGQVVASRDSAVASRTAGIVDEVAVLVGDRVAEG 84
           F    P  V+T+++         L   G + A+  + V    AG +  +    GDRV +G
Sbjct: 33  FNDSTPPTVITQSLSLSDGYQRPLEFSGTIRAANTTGVGFELAGKLSGLYADSGDRVRKG 92

Query: 85  ATLAVLDTELAQIELEQALADIAEARAGIAVAEAQLGRAEDARDRVEGLRNTASFSSARF 144
             LA LDT L + E ++  A +++  A +++A++ L R+ +       L+     SS + 
Sbjct: 93  QQLAALDTSLLKAEQQELQAALSQNSADLSLAQSTLKRSLE-------LKKQGYVSSQQL 145

Query: 145 DDAMSDLAAATGELNQARARLLNAEAAEQRARYTLDRARITAPFAGVVLSVAADPGQFIS 204
           D    +L    G L  AR RL   +A+       L+++R+ APF G + S + + G+ + 
Sbjct: 146 D----ELEGRLGSLEGARERL---KASLYANTLKLEKSRLLAPFDGSIGSRSFNLGEVVP 198

Query: 205 VGDPIARIIDINALEIEAQVPSQFAPAIPPGVTVKGVSEAGQQLDLQI-----RAIL--- 256
           +G P+  +++  A +    VP+  A ++            GQ +DL++     RA+L   
Sbjct: 199 LGQPVFVLVEDKAAQAHVGVPADIAKSL----------TQGQLMDLRVGREHYRAVLAGI 248

Query: 257 -PTESVSTRTRPVRLS--GDLDALGATLAVGQSITLQVPVSAPRAALAVPKDALVQGAQG 313
            P+    TRT  +RLS   D   L   +A    +  Q  V+ P     VP  AL  G +G
Sbjct: 249 NPSIDPVTRTVGLRLSLPSDAGVLNGEIAY---LHYQQQVNTP--GYWVPVSALTDGLRG 303

Query: 314 -WTVFV-----DADGIAEPRPVRIGVAMGDRFEVLSGLAEGDAVVVRGNERLRPGQALQ 366
            W ++V     + + + E R V I     DR  ++  L  GD +V +G  +L  G+ +Q
Sbjct: 304 LWNLYVVEPRGENEFVVERRDVEILFTDRDRAYLIGALNAGDQIVTQGLHKLVVGEHVQ 362