Pairwise Alignments

Query, 396 a.a., efflux transporter, RND family, MFP subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 356 a.a., secretion protein HlyD (RefSeq) from Shewanella amazonensis SB2B

 Score =  124 bits (311), Expect = 4e-33
 Identities = 109/361 (30%), Positives = 167/361 (46%), Gaps = 22/361 (6%)

Query: 13  MLALMVLPTVPPLFAQERPAAVVTETVEERALAETLPVFGQVVASRDSAVASRTAGIVDE 72
           +LAL ++     L A ER   V T  VE+R L+  L V G V +   + + +  AG ++ 
Sbjct: 8   LLALALIMGGQVLAADERSVGVAT--VEQRPLSPKLMVVGTVHSRSLAQLTTGVAGKLEW 65

Query: 73  VAVLVGDRVAEGATLAVLDTELAQIELEQALADIAEARAGIAVAEAQLGRAEDARDRVEG 132
           V    G RV+ G  +A LD     ++L       AE +A +   E  L R E    R+E 
Sbjct: 66  VQE-AGTRVSAGEVVARLDATPLTLQL-------AEQQALVNREEIALARLERNLTRLER 117

Query: 133 LRNTASFSSARFDDAMSDLAAATGELNQARARLLNAEAAEQRARYTLDRARITAPFAGVV 192
           L  + S S    DD  S+   A   L  AR RL          R  L R ++ APF G+V
Sbjct: 118 LAASQSISRTEIDDTRSERDLAKSSLELARVRL-------DIIRDNLARTQLKAPFGGIV 170

Query: 193 LSVAADPGQFISVGDPIARIIDINALEIEAQVPSQFAPAIPPGVTVKGVSEAGQQLDLQI 252
           +S +   G+ +   +P+  I D + LEI    P + +  +  G  +K V  +  +   +I
Sbjct: 171 ISRSHQAGEDVGPAEPVLTITDPDHLEIRLHAPLKHSRRVNIGDELK-VYHSNGEFSARI 229

Query: 253 RAILPTESVSTRTRPVRLSGDL-DALGATLAVGQSITLQVPVSAPRAALAVPKDALVQGA 311
           R ++P   V ++T   RL  DL  A+   + +G+ +++ +P++       VP+DALV  +
Sbjct: 230 RTLIPVSDVRSQTFEARL--DLPQAMAREINIGELVSMALPIAPATLTTLVPRDALVLRS 287

Query: 312 QGWTVF-VDADGIAEPRPVRIGVAMGDRFEVLSGLAEGDAVVVRGNERLRPGQALQAVDG 370
            G +VF V  +  AE  PV +G   G    V   L  GD +V+RG E L  G  L     
Sbjct: 288 SGASVFRVTPEQTAERIPVTLGDGEGPWIAVRGELNAGDTLVIRGAETLTDGMKLTVQQA 347

Query: 371 A 371
           A
Sbjct: 348 A 348