Pairwise Alignments

Query, 396 a.a., efflux transporter, RND family, MFP subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  102 bits (254), Expect = 2e-26
 Identities = 96/371 (25%), Positives = 166/371 (44%), Gaps = 36/371 (9%)

Query: 27  AQERPAAVVTETVEERALAETLPVFGQVVASRDSAVASRTAGIVDEVAVLVGDRVAEGAT 86
           A  R   + +  VE   +A+ L + G++ A+R   +A+  +G V  + +     V++G  
Sbjct: 59  AGARAVPIASARVEAHEVAQHLSLVGKLAANRSVQIAAEVSGKVQAINLSDNQAVSQGQV 118

Query: 87  LAVLDTELAQIELEQALADIAEARAGIAVAEAQLGRAEDARDRVEGLRNTASFSSARFDD 146
           L         +E  +A A++AEA+A +     +LG                      +  
Sbjct: 119 LV-------HLEDAKAKANLAEAKAYLNDERRKLGE---------------------YKR 150

Query: 147 AMSDLAAATGELNQARARLLNAEAAEQRARYTLDRARITAPFAGVVLSVAADPGQFISVG 206
            +   A    E++   A +  AEA  Q A+  LD   + APF GV+  V    G+ +SVG
Sbjct: 151 LIKQHAITQTEIDAQLASVDIAEARLQAAQADLDYHTLKAPFDGVIGLVDFSLGKLVSVG 210

Query: 207 DPIARIIDINALEIEAQVPSQFAPAIPPGVTVKGVSEA--GQQLDLQIRAILPTESVSTR 264
             +  + D++++ ++ Q+P ++   I  G+ V   S A  G+Q   Q+ A+ P  +  T 
Sbjct: 211 SELVSLDDLSSMRLDLQIPERYLSQIYLGMPVVASSSAWPGEQFHGQVVAMAPRINSETL 270

Query: 265 TRPVRLSGDLDALGATLAVGQSITLQVPVSAPRAALAVPKDAL-VQGAQGWTVFVDADGI 323
              VR++ D  +L   L  G  I+ ++   AP     VP  AL   G + +   +D+D I
Sbjct: 271 NLKVRVNFDNPSL--QLRPGMLISARLDF-APVTQAVVPVQALEYSGTKRFVYVIDSDNI 327

Query: 324 AEPRPVRIGVAMGDRFEVLSGLAEGDAVVVRGNERLRPGQALQAVDGAPGGGAPEEGART 383
           A    V +G  + D+  +  GL+ GD +VV+G   +R G  ++  D   G  A   G R 
Sbjct: 328 ARRTQVTLGARIDDQVLIDDGLSLGDRIVVKGLVNMRDG--IKVEDVETGQLAEGLGGRR 385

Query: 384 PDDTQSRAAPQ 394
              TQ++   Q
Sbjct: 386 LTQTQTQTQTQ 396