Pairwise Alignments

Query, 396 a.a., efflux transporter, RND family, MFP subunit (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 356 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (258), Expect = 6e-27
 Identities = 98/343 (28%), Positives = 157/343 (45%), Gaps = 24/343 (6%)

Query: 27  AQERPAAVVTETVEERALAETLPVFGQVVASRDSAVASRTAGIVDEVAVLVGDRVAEGAT 86
           A ER   VV   VE RAL+  + V G V +      A  TAGI  ++     + V E  T
Sbjct: 24  APERLVQVVQ--VENRALSPKIMVIGSVHSRN---YAELTAGIEGKL-----EWVIEAGT 73

Query: 87  LAVLDTELAQIELEQALADIAEARAGIAVAEAQLGRAEDARDRVEGLRNTASFSSARFDD 146
           L      +A+IE  +     A+  A I      L R      R++ L    + S    D 
Sbjct: 74  LVKAGEVVARIEKTRLELQKAQQEAQIEYETVGLSRLNRELKRLQKLMANKNASETELDK 133

Query: 147 AMSD--LAAATGELNQARARLLNAEAAEQRARYTLDRARITAPFAGVVLSVAADPGQFIS 204
           A SD  LAAA  +L Q +  ++  + A         R ++ APFAG++ +     G+ IS
Sbjct: 134 ARSDRDLAAANLKLAQIKLEMILDDIA---------RTQVKAPFAGIITARQRQAGEDIS 184

Query: 205 VGDPIARIIDINALEIEAQVPSQFAPAIPPGVTVKGVSEAGQQLDLQIRAILPTESVSTR 264
             + I  I D + LEI    P + +  +  G  ++     G +   +IR+++P   V ++
Sbjct: 185 RAESIVAITDPDNLEIRLHAPLKHSRRVKVGDELRVYHGLG-EFSAKIRSLIPVSDVRSQ 243

Query: 265 TRPVRLSGDLDALGATLAVGQSITLQVPVSAPRAALAVPKDALVQGAQGWTVF-VDADGI 323
           T   R+   L+     L VG+ ++L +P++  +    VP+DA+V  + G  VF +D    
Sbjct: 244 TFEARIDLPLERQD-MLNVGELVSLALPIAPKQLTTLVPRDAVVLRSAGAFVFKIDESNK 302

Query: 324 AEPRPVRIGVAMGDRFEVLSGLAEGDAVVVRGNERLRPGQALQ 366
           A    V +G   G+   V   L++ D VV+RG E L+ GQ ++
Sbjct: 303 AVKVAVELGDGEGEWIAVKGELSDSDQVVIRGAETLQDGQQVK 345