Pairwise Alignments

Query, 463 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 495 a.a., sigma-54 dependent transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  291 bits (745), Expect = 3e-83
 Identities = 183/485 (37%), Positives = 260/485 (53%), Gaps = 28/485 (5%)

Query: 6   ILLIEDTPSLQLVYDAIIRGAGHAVICADTADAG---LTGFKTHKPRVVVLDLMLPDRDG 62
           IL+ +D    + + + +++  G+  +  D+ DA    LT         VVLDL++P  DG
Sbjct: 5   ILIADDDAVQRRLVENMVQKCGYEAVSVDSGDAAVEALTAPDAPAIDAVVLDLVMPGLDG 64

Query: 63  LELMRECLALNPDARFVVITANGSINRAVEAMRGGAYEFLVKPFDEGRFLAAIDNALRDH 122
           L ++ +  A   D   +V TA+G I+  V AMR GA++F+VKP    R   ++ NAL   
Sbjct: 65  LGVLSKIRASGLDVPVIVQTAHGGIDNVVSAMRAGAHDFVVKPVGIERLQVSLRNALNAS 124

Query: 123 VRPPE-----ETPEVLNDFRGFIGSSDTMQDVYRRIQSVSRSMATVFITGESGTGKEVCA 177
               E        E    F   I  S+ M  V R  +  + S   V I GESG GKE+ A
Sbjct: 125 AMKGELQRIRHAREGRLTFSDIITRSEAMAPVLRAAEKAAGSAIPVLIEGESGVGKELFA 184

Query: 178 QAVHDSSTRAGKPFVPLNCGAIPSDLLESEVFGHLRGSFTGAIADKIGAAAAADGGTLFL 237
           +A+H SS R  KPFV +NCGAIP +L+ES +FGH +G+FTGA     G    A GGTLFL
Sbjct: 185 RAIHGSSDRRSKPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHDGKFVEASGGTLFL 244

Query: 238 DEICEMDLNLQTKLLRFLQTSTIQPVGATRARKINVRIICATNRNPLEEVRRGRFREDLY 297
           DE+ E+ L  Q KLLR LQ   ++ VG  R  K++VRII ATNR  L+ V+ G+FREDL+
Sbjct: 245 DEVSELPLAAQVKLLRALQEGAVEAVGGRRPVKVDVRIISATNRRLLDRVKAGQFREDLF 304

Query: 298 YRLQVVPIHLPPLRERGEDVIAIARDAVRKFAAEEGRRFTGLAPEVEALFRTLPWPGNVR 357
           YRL V+P+ +PPLR R ED+  + R  + +F AEE R   G+  E       L WPGN+R
Sbjct: 305 YRLHVLPLTIPPLRTRREDIPPLLRHFLMRFCAEEKRSIGGITGEAMVRLAQLDWPGNIR 364

Query: 358 QVINVMRNVVVLNDG--------PL-VTQTMLPLE-------ILHHHEAMTNNAGPVGLP 401
           Q+ N +   VV++DG        PL +  +++P E       ++   E     A  V + 
Sbjct: 365 QLENAVYRAVVMSDGDQLGLADFPLAIAPSVVPAEDTTGEPLVIERSEPQFVAASEVPIA 424

Query: 402 PEKPVVSLDGLMG----RTMAEIERMVIEETIARHGGSVPKAARVLDLSPSTIYRKREAW 457
           P   V +L  L      R + E+ER +I   I+ + G + + AR L +  ST+YRK +  
Sbjct: 425 PLPSVGNLSMLTADDEVRPLDEMEREIIRFAISHYRGQMSEVARRLKIGRSTLYRKLDEI 484

Query: 458 MKDAA 462
             D A
Sbjct: 485 EADRA 489