Pairwise Alignments

Query, 463 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 476 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Sphingomonas koreensis DSMZ 15582

 Score =  301 bits (770), Expect = 4e-86
 Identities = 187/459 (40%), Positives = 252/459 (54%), Gaps = 13/459 (2%)

Query: 6   ILLIEDTPSLQLVYDAIIRGAGHAVICADTADAGLTGFKTHKPRV---VVLDLMLPDRDG 62
           ++LI+D P+ + +  AI    G   +CA   +  L    T        +VLD   PD D 
Sbjct: 9   LMLIDDEPAQRRLVTAIAARRGWRTVCASDGETALATLGTPDGMALDAIVLDHWAPDFDA 68

Query: 63  LELMRECLALNPDARFVVITANGSINRAVEAMRGGAYEFLVKPFDEGRFLAAIDNALRDH 122
             L+ E  A  P    +++TANGS+  AV AMR GA +FLVKP    R LAA+D A+   
Sbjct: 69  AGLIAELRANRPMLPILLLTANGSVAAAVSAMRAGATDFLVKPLAPERLLAALDTAVGAK 128

Query: 123 V----RPPEETPEVLNDFRGFIGSSDTMQDVYRRIQSVSRSMATVFITGESGTGKEVCAQ 178
           V    RP  E   V   F   +GS+   +         +R+   V I GESG GKEV A+
Sbjct: 129 VSGELRPLTEKMGVNLAFDEIVGSAPQFRAALAIAAKAARARVPVLIEGESGVGKEVVAE 188

Query: 179 AVHDSSTRAGKPFVPLNCGAIPSDLLESEVFGHLRGSFTGAIADKIGAAAAADGGTLFLD 238
           A+H +S R  KP V +NCGAIP++L+ESE+FGH +G+FTGA   KIG    ADGGT+ LD
Sbjct: 189 AIHAASPRHAKPVVRVNCGAIPANLVESELFGHEKGAFTGAFERKIGRFQEADGGTILLD 248

Query: 239 EICEMDLNLQTKLLRFLQTSTIQPVGATRARKINVRIICATNRNPLEEVRRGRFREDLYY 298
           EI EM L  Q KLLR LQ+  + P+GA    +++VR+I ATN+  L EV  GRFREDLYY
Sbjct: 249 EIGEMPLEAQVKLLRVLQSGEVHPIGARHVSEVDVRVIAATNKTLLTEVEEGRFREDLYY 308

Query: 299 RLQVVPIHLPPLRERGEDVIAIARDAVRKFAAEEGRRFTGLAPEVEALFRTLPWPGNVRQ 358
           RL VV + +PPLRER  D+  +AR  + + A + G R  G+  +  +L     WPGNVRQ
Sbjct: 309 RLNVVQVTIPPLRERAGDIAPLARHLLARIAEQPGLRPLGITDDAISLLAGYDWPGNVRQ 368

Query: 359 VINVMRNVVVLNDGPLVTQTMLPLEILHHHEAMTNNAGPV-GLPPEKPVVSL---DGLMG 414
           + N +    VL DG  +T+   P +I    E      G   G       ++L   DG + 
Sbjct: 369 LQNALFRAAVLCDGDALTRADFP-QIAQLSEGRPAAGGMAHGGAASGAGITLFRADGNL- 426

Query: 415 RTMAEIERMVIEETIARHGGSVPKAARVLDLSPSTIYRK 453
           R + EIE  VI   I  + G + + AR L +  ST+YRK
Sbjct: 427 RALDEIEADVIRLAIGHYRGRMTEVARRLGIGRSTLYRK 465