Pairwise Alignments

Query, 361 a.a., protein of unknown function UPF0118 (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 360 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  221 bits (564), Expect = 2e-62
 Identities = 132/351 (37%), Positives = 199/351 (56%), Gaps = 11/351 (3%)

Query: 6   RQQVLSWSIAALVFLALLWLLGDVILPFVVGGAIAYFLDPVAD-----RLEAMGLSRTIS 60
           ++Q L W I   + LALL  LG ++ PFV  G I Y L+P  D     RL  + + R ++
Sbjct: 9   QKQNLVWLIVGFLLLALLIALGPMLSPFVAAGIIGYALNPGVDWIASRRLGPVRVPRFVA 68

Query: 61  TAIIALVAVFVFIIAALLIIPTLIQQTIALGEAIPQILSQLQAFLSERFPSLN-DPESTI 119
             I+ L+ +   +   L+++P +++Q   L   +P +L +L AF+S R   L  D    +
Sbjct: 69  VTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFVSPRLHQLGIDVRLDL 128

Query: 120 RESLATLGEMIRSRSGELVNKVFASA----LGVINAVIFIIVCPVVAFYLLLDWDNMVAR 175
               + L + I + S E+   V ASA      ++  +  ++  P+V FYLL DW   + R
Sbjct: 129 AGIKSLLTQQISTSSDEVWTSVLASAKVGGTALLTWLANLLFVPMVLFYLLQDWHQFIKR 188

Query: 176 IDDLLPLDHKATIRKLAGEVDGVMAGFVRGQLTVCLILGTFYSIALMLVGLQFGLVVGAV 235
           +  L+P      I  +A EVDG++  ++RGQL V L+L  +YS+AL   G    L VG +
Sbjct: 189 MQILIPRRWAGRINTMAAEVDGLLGQYLRGQLLVMLVLAVYYSVALTAAGFDSALPVGVL 248

Query: 236 AGLLTFIPYVGSLVGGTLSIGLAIFQFWGDPGWIVAVALIFILGQMIEGNYLTPKLVGDS 295
            GLL FIPYVG  +G  L+I  AI QF G  G ++ VALI+ +GQ++E   LTPKLVG+ 
Sbjct: 249 TGLLVFIPYVGFGLGLVLAILAAILQFDGAIG-LLWVALIYGVGQVLESFILTPKLVGER 307

Query: 296 VGLHPVWLLFALSAFGTAFGFVGMLVAVPVSAMIGVLVRFAIGQYRGGLLY 346
           +GLHP+ ++FAL AFG  FGFVG+L+A+P SA++ V+      +Y     Y
Sbjct: 308 IGLHPLVVIFALLAFGQLFGFVGVLLALPASAIVSVIALHVRREYLASNFY 358