Pairwise Alignments

Query, 511 a.a., NADH dehydrogenase (quinone) (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 1264 a.a., NADH dehydrogenase (quinone) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  162 bits (410), Expect = 7e-44
 Identities = 121/409 (29%), Positives = 197/409 (48%), Gaps = 14/409 (3%)

Query: 79  VVIAGIVAVAVIVYSRFDVTEDEKRVGFHALSHALLVGVCGAFLTGDIFNLYVWFEVMLI 138
           V+IAGI  + V VYS   +  D +  G+      +   + G  L  D    YV++E+M  
Sbjct: 287 VIIAGI-GLVVAVYSTGYIHHDRRAGGYWFFLLLMCGSLSGLALARDFGGFYVFWELMTF 345

Query: 139 ASFGLLVIGGRRDQIDAAVKYVGLNLVATLAFLTGVGILYGAAGTLNMADLHLVLADRQS 198
           +S+ L+          AAVKY  + +    A L G  +L   AGTL+ A L   LA    
Sbjct: 346 SSYFLVAHEATDKAFHAAVKYFVMCVAGACAMLPGFMLLSAQAGTLDFAAL-AGLAATLP 404

Query: 199 ETAVLASAALLLFAFGAKAAMFPVFAWLPASYHTPAFATSALFAALLTKVGVYALLRVFT 258
              V  +  L    F  KA + P   WLP ++     + S   + +LTK GVY  +R+  
Sbjct: 405 APVVKGAVVLAFVGFAVKAGLVPGHGWLPDAHPAAPSSISGPLSGILTKTGVYGTVRLML 464

Query: 259 VVY---------DGGGGFIQPILLIGAV--LTMVIGVLGAAAQNDVRRILSFHIISQIGY 307
            V+         +  GGF    LL+ A+   TM+ G L A  Q+D++R+L++  + Q+G 
Sbjct: 465 AVFGSAVLLKAGESAGGFSSMGLLVTALGTATMLYGELMALKQDDLKRLLAYSTMGQVGE 524

Query: 308 MVLGLALFTPLAIIGAIFYLFHHIIVKANLFFVAGLIKLKAGSEELDKIGGLLKASPFLA 367
           + + + L T LA  G++ ++ +H I+K  LF  AG + L+AGS++L  + G+ +  PF A
Sbjct: 525 IFMVIGLGTWLATTGSLLHVLNHAIMKNLLFLCAGGLILRAGSKKLADLAGMARVMPFTA 584

Query: 368 ILFLIPALSLAGIPPLSGFWAKFIIVQASLEARDWWVALAALAVGLITLFSMTKIWLAAF 427
              ++  +S+ G+PP +GF  K++++QA + A    VA   L   L       +I     
Sbjct: 585 GCMVVGLISIMGLPPFNGFVGKYLMLQALVAAGHPAVAAVLLLGSLAGCVYYMRIVRTLV 644

Query: 428 WKDHPDAAFAKGPVMPRSMTAPIAVLA-VMTVIIGLGAGPLYTVAEEAA 475
           ++ +      + PV  R  T  +A L  V+ V+  LG   +  VA+  A
Sbjct: 645 FQPYTGPMVQEAPVSMRVATGVLAALCLVLGVLPQLGLSLVTPVADMLA 693



 Score =  156 bits (394), Expect = 5e-42
 Identities = 128/481 (26%), Positives = 223/481 (46%), Gaps = 46/481 (9%)

Query: 7    IVIPMITAVITLLLRKTALAYHVSLLGSVALLGSGLILLRAVLTGGPMAAQMGGWEAPFG 66
            +++PM+ AV+  LLR+   A  +S   ++A+    +++                    FG
Sbjct: 714  VLVPMLGAVVPFLLRRDRKAAGLSTAITLAVAAIAVVV--------------------FG 753

Query: 67   ITLFADILSAAMVVIAGIVAVAVIVYSRFDVTEDEKRVGFHALSHALLVGVCGAFLTGDI 126
              L  D +S A  ++  ++    + Y+   +     +  F+     ++ G+ G   + D+
Sbjct: 754  RGL--DSISFAFALVVPVIGCLNMFYAVGYMEHSHTQWRFYTFFLFMVGGLMGVAASNDL 811

Query: 127  FNLYVWFEVMLIASFGLLVIGGRRDQ-IDAAVKYVGLNLVATLAFLTGVGILYGAAGTLN 185
            F  + ++E+M   S   +++       +    KY   N++       GV +L   AG  +
Sbjct: 812  FGFFTFWEIMSSWSLYFVIVHEENPAALREGFKYFFFNVLGAAFLFLGVVMLSSMAGDPS 871

Query: 186  MADLHLVLADRQSETAVLASAALLLFAFGAKAAMFPV---FAWLPASYHTPAFATSALFA 242
               +   L       A  A  AL+   F  KAA  P        PA+  TP    S   +
Sbjct: 872  FGAVRSALPTMPVALAATA-VALMAIGFTMKAAQLPFRIDVQMHPATAPTPV---SGYIS 927

Query: 243  ALLTKVGVYALLRVFTVVYDGGGGFI--------QPILLIGAV----LTMVIGVLGAAAQ 290
            ++L K  ++ L ++F V+  GG GF         QP ++        +T+V+  L A  Q
Sbjct: 928  SVLLKSALFGLAKLFFVL--GGAGFFTGLASQWGQPQVMYAIAWVGGITIVMAALLAVMQ 985

Query: 291  NDVRRILSFHIISQIGYMVLGLALFTPLAIIGAIFYLFHHIIVKANLFFVAGLIKLKAGS 350
            +D++ +L +  +SQ+GYMV+G+AL TPL + G + +L +H++ K  LF VAG + L    
Sbjct: 986  SDLKLVLIYSTVSQLGYMVVGVALGTPLGMAGGMLHLVNHVLFKDLLFLVAGSLILCTHK 1045

Query: 351  EELDKIGGLLKASPFLAILFLIPALSLAGIPPLSGFWAKFIIVQASLEARDWWVALAALA 410
              LD++GG+ +  P    +F I ALS+ G+PP +GF +K+I+  A +   +  +AL +LA
Sbjct: 1046 HSLDELGGIGQRMPVTLTMFAIGALSVVGVPPTNGFASKWILYHALMAEGEVALALLSLA 1105

Query: 411  VGLITLFSMTKIWLAAFWKDHPDAAFAKGPVMPRSMTAPIAVLAVMTVIIGLGAG-PLYT 469
              ++TL    K   +AF    P    A     PR M  P+ +LA   +I G+  G PL  
Sbjct: 1106 GSVLTLAYFAKFLHSAF-LGRPSPELAHVHEAPRIMLVPMGILAAGCIITGVFPGLPLLA 1164

Query: 470  V 470
            +
Sbjct: 1165 I 1165



 Score = 45.4 bits (106), Expect = 1e-08
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 5/165 (3%)

Query: 271 ILLIGAVLTMVIGVLGAAAQNDVRRILSFHIISQIGYMVLGLALFTPLAIIGAIFYLFHH 330
           + ++GA+L +   V   AA+     +L    +S IG  +LGL L     ++G      + 
Sbjct: 13  LAMLGALLLLGGAVSALAARRRPFTMLGLMCLSDIGLTLLGLGLGDGAGLVGGTTQFIYQ 72

Query: 331 IIVKANLFFVAGLIKLKAGSEELDKIGGLLKASPFLAILFLIPALSLAGIPPLSGFWAKF 390
              +         +   AGS+ LD + G+  A P   + F     +  G+        + 
Sbjct: 73  FAARCLALLTLVRLARTAGSDRLDDMRGIRAALPLTGLFFGFAMFAGMGLSVFLVPDGRA 132

Query: 391 IIVQASLEARDWW----VALAALAVGLITLFSMTKIWL-AAFWKD 430
            I+ A+  A  W     VA A +A+   T+ S+  I L +  W++
Sbjct: 133 FILHAAFAAGHWGYAVAVAFAGMALAAATVLSVQAICLESGQWRE 177



 Score = 26.2 bits (56), Expect = 0.008
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 125  DIFNLYVWFEVMLIASFGLLVIGGRRDQIDAAVKYVGLNLVATLAFLTGVGILYGAAGTL 184
            D+    + F  +++A +G+    G       A     L ++  +AF  G   L G  GT+
Sbjct: 1166 DMMGRELGFAGLMVAPWGVASGAG-------AFNATALAVLLAVAFFGGRTALRGLIGTV 1218

Query: 185  NMADLHLVLADRQSETAVLA-----SAALLLFAFGAKAAM 219
               D+H      +++ A LA      A L L    A+AAM
Sbjct: 1219 RTTDIHTCGVAMKADEARLAPQDIYGAPLALLRQLAQAAM 1258