Pairwise Alignments

Query, 871 a.a., ATPase AAA-2 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 857 a.a., clpB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  940 bits (2429), Expect = 0.0
 Identities = 479/855 (56%), Positives = 634/855 (74%), Gaps = 3/855 (0%)

Query: 1   MNMEKFTERSRGFLQAAQTIAMRENHQRMVPEHLLKALLDDEEGLAANLIARAGGDAARV 60
           M +++ T + +  +  AQ++A+  +HQ + P HL+ ALL+ + G    L+ +AG   + +
Sbjct: 1   MRLDRMTNKFQLAISDAQSLALGRDHQFIEPLHLMMALLNQDSGSIHPLLTQAGIRVSAL 60

Query: 61  REALAAALDKLPKVSGDGAQTYLDQQTAKVLDEAEKLATKAGDSFVPVERILTALAVTKS 120
           R  L+  L++LP+V G G    L Q   ++L+  +KLA K  D ++  E  + A      
Sbjct: 61  RSLLSQELERLPQVEGTGGDVQLSQGLIRLLNLCDKLAQKRKDKYISSELFVLAALEGCD 120

Query: 121 GAKTALEAGGVSAQALNGAINDIRKGRTADTASAESGYDALKKFARDLTEAAADGKIDPI 180
                L+  G + + +   I  +R G+  D  +AE    ALKKF  DLTE A  GK+DP+
Sbjct: 121 ALAQCLKKSGATKELMEQTIEQVRGGQKVDDPNAEDQRQALKKFTVDLTERAEQGKLDPV 180

Query: 181 IGRDEEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIINGDVPESLRNKKLMAL 240
           IGRD+EIRR +QVL RRTKNNPVLIGEPGVGKTAI EGLA RI+NG+VPE ++NK++++L
Sbjct: 181 IGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGIKNKRVLSL 240

Query: 241 DMGSLIAGAKYRGEFEERLKSVLSEVTAAAGEIILFIDEMHTLVGAGKADGAMDASNLLK 300
           DMG+LIAGAKYRGEFEERLK+VL+E+    G++ILFIDE+HT+VGAGK DGAMDA N+LK
Sbjct: 241 DMGALIAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGAGKGDGAMDAGNMLK 300

Query: 301 PALARGELHCVGATTLDEYRKYVEKDAALARRFQPVMVQEPTVEDTVSILRGIKEKYELH 360
           PALARG+LHCVGATTLDEYR+Y+EKDAAL RRFQ V+V EP+VEDT++ILRG+KE+YELH
Sbjct: 301 PALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYELH 360

Query: 361 HGVRISDSALVAAATLSHRYITDRFLPDKAIDLVDEAASRLRMEVDSKPEELDALDREIL 420
           H V I+D A+VAAAT+SHRY++DR LPDKAIDL+DEAAS +RM++DSKPE LD L+R  +
Sbjct: 361 HHVEITDPAIVAAATMSHRYVSDRKLPDKAIDLIDEAASSIRMQMDSKPESLDRLERRAI 420

Query: 421 QKQIEAEALRLEDDAASRERLASLEKDLSDLQQRSAEMTAQWQSERDKLASARDLKEHLD 480
           Q ++E +AL  E+D ASR RL  L+++L D++ +++E++  W++E+  LA  + +K  L+
Sbjct: 421 QLKLEEQALAKENDEASRRRLDHLQEELRDVEAKASELSEIWRTEKAALAGTQHIKADLE 480

Query: 481 KARAELEIAKREGNLARAGELSYGVIPGLEKQLAEAESGEGD--VMVEEAVRPEQIASVV 538
           +AR +LE+A+R G+L R  EL YG IP LEKQL  A   E     ++   V   +IA V+
Sbjct: 481 QARLDLEVARRAGDLTRMSELQYGRIPELEKQLDLASQAEMQDMTLLRNKVTDLEIAEVL 540

Query: 539 ERWTGIPTSKMLEGEREKLLRMEEEIGRRVIGQKTAVNAVANAVRRARAGLNDENRPLGS 598
            + TGIP SKMLEGEREKLL+ME  +  RVIGQ  AV+AVANA+RR+RAGL D NRP+GS
Sbjct: 541 SKATGIPVSKMLEGEREKLLQMEVALHERVIGQNEAVDAVANAIRRSRAGLADPNRPIGS 600

Query: 599 FLFLGPTGVGKTELTKAVAEFLFDDDSAMVRIDMSEFMEKHAVARLIGAPPGYVGYDEGG 658
           FLFLGPTGVGKTEL K++A FLFD +SA+VRIDMSEFMEKHAV+RL+GAPPGYVGY+EGG
Sbjct: 601 FLFLGPTGVGKTELCKSLARFLFDSESALVRIDMSEFMEKHAVSRLVGAPPGYVGYEEGG 660

Query: 659 VLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIVLTSNL 718
            LTEAVRR+PY V+L DEVEKAHPDVFN+LLQVLDDG LTDGQGRTVDF+ T+I++TSNL
Sbjct: 661 YLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 720

Query: 719 GAQALSQLPDGADASAAKRDVMDAVRAHFRPEFLNRLDETIIFDRLVRDDMDAIVDIQLA 778
           G+  + +       S  K  VM+ V   FRPEFLNR+DE+++F  L  +++  I  IQ+A
Sbjct: 721 GSDIIQEGFGHLSYSEMKSAVMNVVTHSFRPEFLNRIDESVVFHPLDAENIKHIASIQIA 780

Query: 779 RLQKRLDARKLTLALDDAARSWLADEGYDPVFGARPLKRVIQRALQDQLAEMILAGDVTD 838
            L+KRL  +  TL + D A S +A+ G+DPV+GARPLKR +Q+ +++ LA+ +L GD+  
Sbjct: 781 SLRKRLAEKDYTLEITDEALSLIAEIGFDPVYGARPLKRALQQEMENPLAQKLLRGDLLP 840

Query: 839 GETIPVSAGPDGLLV 853
           G+ I VS   DG LV
Sbjct: 841 GKPIKVSC-VDGELV 854