Pairwise Alignments

Query, 871 a.a., ATPase AAA-2 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 865 a.a., ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  931 bits (2407), Expect = 0.0
 Identities = 484/860 (56%), Positives = 623/860 (72%), Gaps = 9/860 (1%)

Query: 1   MNMEKFTERSRGFLQAAQTIAMRENHQRMVPEHLLKALLDDEEGLAANLIARAGGDAARV 60
           M++ KFTE+S+  L  AQ IA+R  HQ +  EHL  AL+  E+GL   L+ R G      
Sbjct: 1   MDIGKFTEKSQQALAEAQNIAVRFGHQEVDAEHLADALVRQEQGLVPRLLDRMGQKPEAF 60

Query: 61  REALAAALDKLPKVSGDGA---QTYLDQQTAKVLDEAEKLATKAGDSFVPVERILTALAV 117
            EAL   L K P VSG GA   Q ++ ++   VL +A+  A +  D +V VE I   L  
Sbjct: 61  AEALERELGKRPAVSGPGAAPGQIFVSKRLNAVLVKAQDFARQLKDEYVSVEHIFCVLLE 120

Query: 118 TKSGAKTALEAG--GVSAQALNGAINDIRKGRTADTASAESGYDALKKFARDLTEAAADG 175
             +       A    +S + + G + D+R  +   +A+ E  Y+AL+K+ RDL E A  G
Sbjct: 121 EPASTIMGRIAREFSLSREKVLGVLEDVRGSQRVTSANPEDTYEALQKYGRDLVEEARKG 180

Query: 176 KIDPIIGRDEEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIINGDVPESLRNK 235
           K+DP+IGRD EIRR +++LSRRTKNNPVLIGE GVGKTAI EGLA RI+ GDVPE L+ +
Sbjct: 181 KLDPVIGRDAEIRRVIRILSRRTKNNPVLIGEAGVGKTAIVEGLAHRILKGDVPEGLKER 240

Query: 236 KLMALDMGSLIAGAKYRGEFEERLKSVLSEVTAAAGEIILFIDEMHTLVGAGKADGAMDA 295
            L ALDMG+LIAGAKYRGEFEERLK+VL EV  + G II+FIDE+HT+VGAGK DGAMDA
Sbjct: 241 GLFALDMGALIAGAKYRGEFEERLKAVLKEVEKSEGRIIMFIDELHTIVGAGKTDGAMDA 300

Query: 296 SNLLKPALARGELHCVGATTLDEYRKYVEKDAALARRFQPVMVQEPTVEDTVSILRGIKE 355
           SNLLKP LARGELHC+GATTLDEYRKY+EKD AL RRFQPV+V EPT+ED +SILRG+KE
Sbjct: 301 SNLLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQPVLVDEPTIEDAISILRGLKE 360

Query: 356 KYELHHGVRISDSALVAAATLSHRYITDRFLPDKAIDLVDEAASRLRMEVDSKPEELDAL 415
           ++E+HHGVRISDSA+V A TLSHRYITDR LPDKAIDL+DEAA+ +R E+DS P +LD  
Sbjct: 361 RFEVHHGVRISDSAIVEAVTLSHRYITDRQLPDKAIDLIDEAAALIRTEIDSLPADLDEA 420

Query: 416 DREILQKQIEAEALRLEDDAASRERLASLEKDLSDLQQRSAEMTAQWQSERDKLASARDL 475
           +R+I+Q +IE EALR E D ASRERL  LE +L+DL+     + +QW+ E+  +   R +
Sbjct: 421 NRKIMQLEIEREALRRETDVASRERLERLENELADLRAEQTALLSQWEREKGSIDHVRSI 480

Query: 476 KEHLDKARAELEIAKREGNLARAGELSYGVIPGLEKQLAEAESGEGDV--MVEEAVRPEQ 533
           KE +++ R  +E A+R  +L RA EL Y  +  LE+QL  AE G  D   +++E VRP+ 
Sbjct: 481 KEDIERTRHAIEEAERAYDLNRAAELKYSRLLELERQLESAEKGGHDETRLLKEEVRPDD 540

Query: 534 IASVVERWTGIPTSKMLEGEREKLLRMEEEIGRRVIGQKTAVNAVANAVRRARAGLNDEN 593
           IA +V RWTGIP +++LE EREKLLR+ + +  RV+GQ+ AV+AV+ AV RARAGL+D +
Sbjct: 541 IAEIVARWTGIPVTRLLESEREKLLRLADVLHERVVGQEEAVDAVSEAVLRARAGLSDPS 600

Query: 594 RPLGSFLFLGPTGVGKTELTKAVAEFLFDDDSAMVRIDMSEFMEKHAVARLIGAPPGYVG 653
           RP+GSF+FLGPTGVGKTEL K +AE LFD +  +VR+DMSE+MEKHAVARLIGAPPGYVG
Sbjct: 601 RPIGSFIFLGPTGVGKTELCKTLAEALFDTEENIVRLDMSEYMEKHAVARLIGAPPGYVG 660

Query: 654 YDEGGVLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIV 713
           YDEGG LTEAVRR+PY VVLFDEVEKAHPDVFN LLQ+LDDG LTD  GRTVDF+ T+I+
Sbjct: 661 YDEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNTLLQILDDGRLTDSHGRTVDFRNTIII 720

Query: 714 LTSNLGA-QALSQLPDGAD-ASAAKRDVMDAVRAHFRPEFLNRLDETIIFDRLVRDDMDA 771
           +TSN+G+   L  + +G +  S  +  VM+ +R HFRPEFLNR+DET++F  L+   +  
Sbjct: 721 MTSNIGSPYMLDGISEGGEFLSGVREKVMEELRRHFRPEFLNRVDETVLFKPLLPAQIAR 780

Query: 772 IVDIQLARLQKRLDARKLTLALDDAARSWLADEGYDPVFGARPLKRVIQRALQDQLAEMI 831
           IV++ L RL+ RL  RK+ + L D AR ++A   YDPV+GARPL+R +Q  ++  LA  +
Sbjct: 781 IVELLLGRLRGRLAERKIDIRLGDVARDFIAKAAYDPVYGARPLRRYLQHNIETPLARKL 840

Query: 832 LAGDVTDGETIPVSAGPDGL 851
           +AG++ DG T+ V    D L
Sbjct: 841 IAGELRDGTTVEVDVVDDAL 860