Pairwise Alignments

Query, 871 a.a., ATPase AAA-2 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 862 a.a., endopeptidase Clp ATP-binding chain B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  882 bits (2280), Expect = 0.0
 Identities = 454/864 (52%), Positives = 618/864 (71%), Gaps = 17/864 (1%)

Query: 1   MNMEKFTERSRGFLQAAQTIAMRENHQRMVPEHLLKALLDDEEGLAANLIARAGGDAARV 60
           MN   FT +S+  +Q A  +      Q + P H+L  ++   E +   +  + G +  +V
Sbjct: 1   MNFNNFTIKSQEAVQEAVNLVQSRGQQAIEPAHILHGVMKVGENVTNFIFQKLGMNGQQV 60

Query: 61  REALAAALDKLPKVSGDGAQTYLDQQTAKVLDEAEKLATKAGDSFVPVERILTALAVTKS 120
              +   ++ LPKVSG   + YL +++ +VL +A + + + GD FV +E IL AL   KS
Sbjct: 61  ALVVDKQIESLPKVSG--GEPYLSRESNEVLQKATQYSKEMGDEFVSLEHILLALLTVKS 118

Query: 121 GAKTALEAGGVSAQALNGAINDIRKGRTADTASAESGYDALKKFARDLTEAAADGKIDPI 180
              T L+  G++ + L  AIN++RKG    + S+E  Y +L+K+A +L EAA  GK+DP+
Sbjct: 119 TVSTILKDAGMTEKELRNAINELRKGEKVTSQSSEDNYQSLEKYAINLNEAARSGKLDPV 178

Query: 181 IGRDEEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIINGDVPESLRNKKLMAL 240
           IGRDEEIRR +Q+LSRRTKNNP+LIGEPG GKTAI EGLA RI+ GDVPE+L+NK++ +L
Sbjct: 179 IGRDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAHRILRGDVPENLKNKQVYSL 238

Query: 241 DMGSLIAGAKYRGEFEERLKSVLSEVTAAAGEIILFIDEMHTLVGAGKADGAMDASNLLK 300
           DMG+L+AGAKY+GEFEERLKSV++EV  + G+IILFIDE+HTLVGAGK +GAMDA+N+LK
Sbjct: 239 DMGALVAGAKYKGEFEERLKSVVNEVKKSEGDIILFIDEIHTLVGAGKGEGAMDAANILK 298

Query: 301 PALARGELHCVGATTLDEYRKYVEKDAALARRFQPVMVQEPTVEDTVSILRGIKEKYELH 360
           PALARGEL  +GATTLDEY+KY EKD AL RRFQ V V EP    T+SILRG+KE+YE H
Sbjct: 299 PALARGELRSIGATTLDEYQKYFEKDKALERRFQIVQVDEPDTLSTISILRGLKERYENH 358

Query: 361 HGVRISDSALVAAATLSHRYITDRFLPDKAIDLVDEAASRLRMEVDSKPEELDALDREIL 420
           H VRI D A++AA  LS RYITDRFLPDKAIDL+DEAA++LRMEVDS PEELD + R+I 
Sbjct: 359 HHVRIKDDAIIAAVELSSRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIK 418

Query: 421 QKQIEAEALRLEDDAASRERLASLEKDLSDLQQRSAEMTAQWQSERDKLASARDLKEHLD 480
           Q +IE EA++ E+D   + +L  + K+L++L++      A+WQSE+  +   +  K  ++
Sbjct: 419 QLEIEREAIKREND---KPKLEIIGKELAELKEVEKSFKAKWQSEKTLMDKIQQNKVEIE 475

Query: 481 KARAELEIAKREGNLARAGELSYGVIPGLEKQLAEAESG----EGD-VMVEEAVRPEQIA 535
             + E E A+REG+  +  E+ YG +  L+K++ + +      +GD  M++E V  E IA
Sbjct: 476 NLKFEAEKAEREGDYGKVAEIRYGKLQALDKEIEDTQEKLRGMQGDKAMIKEEVDAEDIA 535

Query: 536 SVVERWTGIPTSKMLEGEREKLLRMEEEIGRRVIGQKTAVNAVANAVRRARAGLNDENRP 595
            VV RWTGIP SKM++ E++KLL +E+E+ +RVIGQ  A+ AVA+AVRR+RAGL D  RP
Sbjct: 536 DVVSRWTGIPVSKMMQSEKDKLLHLEDELHQRVIGQDEAIEAVADAVRRSRAGLQDPKRP 595

Query: 596 LGSFLFLGPTGVGKTELTKAVAEFLFDDDSAMVRIDMSEFMEKHAVARLIGAPPGYVGYD 655
           +GSF+FLG TGVGKTEL KA+AEFLFDD+S M RIDMSE+ EKH+V+RL+GAPPGYVGYD
Sbjct: 596 IGSFIFLGTTGVGKTELAKALAEFLFDDESMMTRIDMSEYQEKHSVSRLVGAPPGYVGYD 655

Query: 656 EGGVLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIVLT 715
           EGG LTEA+RR+PY VVLFDE+EKAHPDVFN+LLQVLDDG LTD +GR V+FK T+I++T
Sbjct: 656 EGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFKNTIIIMT 715

Query: 716 SNLGAQALSQLPDGADAS-------AAKRDVMDAVRAHFRPEFLNRLDETIIFDRLVRDD 768
           SN+G+  +    +    S         K++VM+ ++ + RPEFLNR+DETI+F  L   +
Sbjct: 716 SNMGSSYIQSQMEKLSGSNKEEVIEETKKEVMNMLKKNIRPEFLNRIDETIMFLPLTETE 775

Query: 769 MDAIVDIQLARLQKRLDARKLTLALDDAARSWLADEGYDPVFGARPLKRVIQRALQDQLA 828
           +  IV +Q+  +QK L    + L + DAA ++L+  GYDP FGARP+KR IQR L + L+
Sbjct: 776 IRQIVLLQIKGVQKMLAENGVELEMTDAALNFLSQVGYDPEFGARPVKRAIQRYLLNDLS 835

Query: 829 EMILAGDVTDGETIPVSAGPDGLL 852
           + +L+ +V   + I V +  DGL+
Sbjct: 836 KKLLSQEVDRSKAIIVDSNGDGLV 859