Pairwise Alignments

Query, 519 a.a., BCCT transporter (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 667 a.a., choline transporter from Pseudomonas fluorescens FW300-N2E3

 Score =  215 bits (548), Expect = 4e-60
 Identities = 154/492 (31%), Positives = 246/492 (50%), Gaps = 26/492 (5%)

Query: 20  FAVTGGFIALFCAYALFDIEGLSALVDTSFAFSAKYFGLYWQVLLLATFLIGLVLCFLPG 79
           FA T  FI LF    +   +   A +  +  ++A   G Y+ +L +  +L+ +V+  L G
Sbjct: 21  FAAT--FILLFGLVVIAFPQESGAWLLAAQNWAANTVGWYY-MLAMTLYLVFVVVTALSG 77

Query: 80  SRTLMGGLS--TPEFGTFSWAAMIMCTLLAGGGVFWAAGEPIAHFLSTPPVFGDLSGDVQ 137
              +  G     PEF   SWA M+    ++    F+   EP+ H L  P   G+ +G   
Sbjct: 78  YGKIKLGADHDEPEFSYLSWAGMLFAAGISITLFFFCVSEPLTHMLQPPQ--GE-AGTAD 134

Query: 138 AQAHAALAQSFLHWGFLAWAILGSLTTVMLMHYHYDKGLPLAPRTLLYPLLGDRALSGPI 197
           A A  A+   FLHWG   W +  +   + L ++ Y   LPLA R+ LYPL+G R ++GPI
Sbjct: 135 A-ARQAMQVLFLHWGLHGWGVF-AFVGMALAYFAYRHNLPLALRSALYPLIGKR-INGPI 191

Query: 198 GLIADASCIIAVVAGTVGPIGFLGLQMSYGLNDLTGIPDTFATQAIAILALVGLYTVSAI 257
           G   D   IIA V G    +GF  L ++ GL+ L GI  T   Q   I  ++G   + A+
Sbjct: 192 GYAVDGFGIIATVFGLGADMGFGVLHLNSGLDYLFGIAHTQWIQVGLITLMMGAAIIVAV 251

Query: 258 TGLAKGIKILSQINVLLAVVLLIFMLVAGPTMNIFAGFFGGMQVY--ATHFFDMAMYRGD 315
            G+ KG++++S IN+LLA  LL+F+L AGPT ++       +  Y  A       +Y  D
Sbjct: 252 AGVDKGVRVMSDINMLLACALLLFVLFAGPTQHLLNTLIQNLGDYLGALPMKSFDLYAYD 311

Query: 316 AGLFGDAGWLGWWTVFFWGWFMGYGPLMAVFIARISRGRSIRQIIITLSIAAPLITNFWF 375
                 + WLG WTVF+W W++ + P + +FIARISRGR+IR+ +  + +     T  W 
Sbjct: 312 K----PSDWLGGWTVFYWAWWIAWSPFVGLFIARISRGRTIREFVFGVLLIPLGFTLAWM 367

Query: 376 TIIGGSGIFFEIAEPGVVSGPFEGFNLPA-GLLAITQAMPMGLILSVLFLVLTMCFVATT 434
           +I G S I  ++   G+ +        P+  L  + +  P    +  + + ++  F  T+
Sbjct: 368 SIFGNSAI-DQVLNHGMSALGLSAIENPSMTLYLLLETYPWSKTVIAVTVFISFVFFVTS 426

Query: 435 SDSMSYVISSTMTDG-----EPSTAMRAFWGLAMGVMALILISTGEGGIGKLQSFIVVTA 489
           +DS + V+S+    G     +    +R FWG    ++   L+    G I  L+S +V+T+
Sbjct: 427 ADSGTVVLSTLSAKGGNADEDGPKWLRVFWGAMTALVTSALLFA--GSIDSLKSAVVLTS 484

Query: 490 VPVSLILLPSLW 501
           +P SLILL  +W
Sbjct: 485 LPFSLILLLMMW 496