Pairwise Alignments

Query, 498 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 525 a.a., monosaccharide ABC transporter ATP-binding protein, CUT2 family from Pseudomonas syringae pv. syringae B728a

 Score =  285 bits (728), Expect = 4e-81
 Identities = 162/470 (34%), Positives = 266/470 (56%), Gaps = 7/470 (1%)

Query: 4   LQKSFGKNNVLRGIDLTLDPGSVTVLMGANGAGKSTLVKVICGQHRADGGTMRLATNAFD 63
           + K F     L  + L + PGSV  LMG NGAGKSTL+K+I G ++ D G +RL      
Sbjct: 38  VSKGFPGVVALNDVQLRVRPGSVLALMGENGAGKSTLMKIIAGIYQPDAGEIRLRGKPVS 97

Query: 64  PEDAADAIRQGVVTVHQSIDDGVIPDLDVANNLMLDRLAEHSHGL-FVRERHLRTEAAKV 122
            +    A++ G+  +HQ ++  ++P + +A N+ + R  E  +GL  V  R +    A++
Sbjct: 98  FDTPLSALQAGIAMIHQELN--LMPFMSIAENIWIGR--EQLNGLHMVDHREMHRCTAEL 153

Query: 123 AAAMGIEVNLRARVSDLSVADRQMIAIARAMARAPKVLILDEPTSSLSATEADRLFELID 182
              + I+++    V  LS+A+RQM+ IA+A++    VLI+DEPTS+++ TE   LF +I 
Sbjct: 154 LERLRIKLDPEELVGTLSIAERQMVEIAKAVSYNSDVLIMDEPTSAITETEVAHLFSIIS 213

Query: 183 RLRAQGVAILYISHRMSDIRRIADRIVVMRDGMISGVFETEPLDLEAAVTAMLGHRMTEV 242
            LRAQG  I+YI+H+M+++  IAD + V RDG   G+   + +D ++ +T M+G  +T++
Sbjct: 214 DLRAQGKGIIYITHKMNEVFEIADEVAVFRDGAYIGLQRADSMDGDSLITMMVGRELTQL 273

Query: 243 DAEVRQGTHPVL-EIKNLQLFEGASPITLTAHDGEVVALVGLLGSGKSRLAEILFGIARP 301
             E  +    VL  +  L L      ++     GEV+ + GL+GSG++ +AE LFGI   
Sbjct: 274 FPEREKPAGDVLLSVNRLSLNGIFKDVSFDLRAGEVLGIAGLMGSGRTNVAETLFGITPS 333

Query: 302 IRGSIRIKGKDYSPRSVKDAIAQGVFMSPKDRGTNAVIPAFDIADNMTLPFLQGMSVGSF 361
             G +R  GK         AI  G  +  +DR    + P   + +NM +  L   +   F
Sbjct: 334 DSGEVRFDGKTVHIGDPHQAIELGFALLTEDRKLTGLFPCLSVMENMEMAVLANYAGNGF 393

Query: 362 LKSRQQRGTAQGMVDRLGIVCQSVRDGIGTLSGGNQQKVMIARWLLEPAQVLLLDEPFQG 421
           ++ +  R   + M  +L +   S+   I TLSGGNQQK ++ARWL+   +VL+LDEP +G
Sbjct: 394 VQQKALRSQCEDMCKKLRVKTPSLEQCIDTLSGGNQQKALLARWLMTNPKVLILDEPTRG 453

Query: 422 VDIGARRDIGHHIR-ATTQGRATLVFLAEIDEALEIADRIVVMSEGAIVG 470
           +D+GA+ +I   I    ++G A ++  +E+ E L ++DR++VM EG ++G
Sbjct: 454 IDVGAKVEIYRLISLLASEGMAVIMISSELPEVLGMSDRVMVMHEGEMMG 503



 Score = 97.4 bits (241), Expect = 1e-24
 Identities = 58/231 (25%), Positives = 114/231 (49%), Gaps = 2/231 (0%)

Query: 11  NNVLRGIDLTLDPGSVTVLMGANGAGKSTLVKVICGQHRADGGTMRLATNAFDPEDAADA 70
           N + + +   L  G V  + G  G+G++ + + + G   +D G +R         D   A
Sbjct: 294 NGIFKDVSFDLRAGEVLGIAGLMGSGRTNVAETLFGITPSDSGEVRFDGKTVHIGDPHQA 353

Query: 71  IRQGVVTVHQSID-DGVIPDLDVANNLMLDRLAEHSHGLFVRERHLRTEAAKVAAAMGIE 129
           I  G   + +     G+ P L V  N+ +  LA ++   FV+++ LR++   +   + ++
Sbjct: 354 IELGFALLTEDRKLTGLFPCLSVMENMEMAVLANYAGNGFVQQKALRSQCEDMCKKLRVK 413

Query: 130 V-NLRARVSDLSVADRQMIAIARAMARAPKVLILDEPTSSLSATEADRLFELIDRLRAQG 188
             +L   +  LS  ++Q   +AR +   PKVLILDEPT  +       ++ LI  L ++G
Sbjct: 414 TPSLEQCIDTLSGGNQQKALLARWLMTNPKVLILDEPTRGIDVGAKVEIYRLISLLASEG 473

Query: 189 VAILYISHRMSDIRRIADRIVVMRDGMISGVFETEPLDLEAAVTAMLGHRM 239
           +A++ IS  + ++  ++DR++VM +G + G+ +      E  +    GH++
Sbjct: 474 MAVIMISSELPEVLGMSDRVMVMHEGEMMGILDRSEATQEKVMHLASGHKV 524



 Score = 81.3 bits (199), Expect = 8e-20
 Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 10/228 (4%)

Query: 268 ITLTAHDGEVVALVGLLGSGKSRLAEILFGIARPIRGSIRIKGKDYSPRSVKDAIAQGVF 327
           + L    G V+AL+G  G+GKS L +I+ GI +P  G IR++GK  S  +   A+  G+ 
Sbjct: 51  VQLRVRPGSVLALMGENGAGKSTLMKIIAGIYQPDAGEIRLRGKPVSFDTPLSALQAGIA 110

Query: 328 MSPKDRGTNAVIPAFDIADNMTLPFLQGMSVGSFLKSRQQRGTAQGMVDRLGIVCQSVRD 387
           M  ++     ++P   IA+N+ +   Q   +         R TA+ +++RL I      +
Sbjct: 111 MIHQELN---LMPFMSIAENIWIGREQLNGLHMVDHREMHRCTAE-LLERLRIKLDP-EE 165

Query: 388 GIGTLSGGNQQKVMIARWLLEPAQVLLLDEPFQGV---DIGARRDIGHHIRATTQGRATL 444
            +GTLS   +Q V IA+ +   + VL++DEP   +   ++     I   +RA  QG+  +
Sbjct: 166 LVGTLSIAERQMVEIAKAVSYNSDVLIMDEPTSAITETEVAHLFSIISDLRA--QGKGII 223

Query: 445 VFLAEIDEALEIADRIVVMSEGAIVGEHTNRNIDLAALVADISGATST 492
               +++E  EIAD + V  +GA +G     ++D  +L+  + G   T
Sbjct: 224 YITHKMNEVFEIADEVAVFRDGAYIGLQRADSMDGDSLITMMVGRELT 271