Pairwise Alignments

Query, 346 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 62.4 bits (150), Expect = 1e-14
 Identities = 69/272 (25%), Positives = 105/272 (38%), Gaps = 5/272 (1%)

Query: 38  TIALVRYLSTGDFFQAYLSGVETQAAALGVNLRVFDSRQDAALQADMVDQAIALGVDGII 97
           T+A+V       FF     G E +A  LG NL V DS+ D + +   V+     GV  I+
Sbjct: 28  TVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQNDPSKELSNVEDLTVRGVKAIL 87

Query: 98  IQHGLTESMREAAQRAVDAGIKVVAFDVNVENAAIPQVEQSDYLLGKLALEQAIKDNGDS 157
           I    ++++  A + A  + I V+  D       +     SD ++G       I+    S
Sbjct: 88  INPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVSHIASDNVVGGEMAGHFIEAKIGS 147

Query: 158 FAAGYVYVPGIAPLDRRHAAWEEVKTANPGITEEARIGTLDNPIANANANQARAALQANP 217
             A  + + GIA         E    A  G   +       +       N     L ANP
Sbjct: 148 -DAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQLLASQPADFDRTKGLNVMENLLAANP 206

Query: 218 NISVFFAPYNEFAKGVKIAADELGLSGEMSIYSADISTADIALMREPGSAWKATVATNPA 277
           ++   FA  +E A G   A    G S  + I   D +   IA +     A  ATVA  P 
Sbjct: 207 DVQAVFAQNDEMALGALRAIQASGKS--VMIVGFDGTDDGIAAVERGQLA--ATVAQQPD 262

Query: 278 VVGEVSVRALALMLAGEDPGASVIVPPTLITQ 309
           ++G + +     ML GE   A + V   +I +
Sbjct: 263 MIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294