Pairwise Alignments

Query, 273 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 271 a.a., ISSod2, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  145 bits (367), Expect = 7e-40
 Identities = 87/254 (34%), Positives = 128/254 (50%), Gaps = 2/254 (0%)

Query: 4   AMKTKGYNQRRACALAGIDPRVYR-RRSKRLADTELRVRMKELASERRRFGYRRLHMLLK 62
           A+  +  + R ACA   I    YR RR     + E+   + EL  +   +G+ +    L+
Sbjct: 14  AVANRKISIRLACAAFCISETCYRYRRVNDDENAEIAEFLVELTEKESDWGFGQCFNYLR 73

Query: 63  R-EGWEVNWKKLYRLYRDEGLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALED 121
             +G+  N K++YR+Y +  L +R +  R+       P+  P   NQ WS+DFM D L D
Sbjct: 74  NVKGFAWNHKRVYRIYCELALNLRIKPRRRLKRNAPEPLKEPTKANQVWSIDFMHDQLSD 133

Query: 122 GRRFRVLNVIDDFSRECLAAVVDTSISGARVARELDRIAELRGYPCLVVSDNGTELTSNA 181
           GR +R+ NVIDDF RE LA     S+   RV R L+++ E R  P  +  DNG E  S+ 
Sbjct: 134 GRSYRLFNVIDDFKREGLAIEAGFSLPTMRVIRTLNQLLEGRTKPIAIRCDNGPEFISHE 193

Query: 182 MLKWQEDRKVDWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHACRMIAAWRDDY 241
             +W +  ++   YI PGKP QN  +E  N  +R   +++HLF +L         W   Y
Sbjct: 194 FTEWAKKHEIRIDYIQPGKPQQNAYIERHNKTIRYSWVSKHLFDTLEEVQDYATKWLWFY 253

Query: 242 NHHRPHSSLDGLTP 255
           NH RPH +  G  P
Sbjct: 254 NHERPHKANGGKPP 267