Pairwise Alignments

Query, 273 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 235 a.a., transposase from Herbaspirillum seropedicae SmR1

 Score =  211 bits (537), Expect = 1e-59
 Identities = 108/229 (47%), Positives = 149/229 (65%), Gaps = 2/229 (0%)

Query: 11  NQRRACALAGIDPRVYRRRSKRLADTELRVRMKELASERRRFGYRRLH-MLLKREGWEVN 69
           ++RR C L  I   V R +++   +  L  R+  LA +RRRFGYRR+H +LL+R GW VN
Sbjct: 8   SERRCCGLMNISTSVLRYQARGDNNAALTERITTLAGQRRRFGYRRIHVLLLRRAGW-VN 66

Query: 70  WKKLYRLYRDEGLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVLN 129
            K++YRLY   GL+VR+R  ++  +  R P+ +P+  N  WS+DF+ D L DGRR R LN
Sbjct: 67  VKRVYRLYFKAGLSVRRRLRKRIGMTERLPLLLPEQANYAWSMDFVHDRLADGRRIRCLN 126

Query: 130 VIDDFSRECLAAVVDTSISGARVARELDRIAELRGYPCLVVSDNGTELTSNAMLKWQEDR 189
           ++DDF++E +A  VDTSISG R+ R LD++A+ R  P ++  D+G E TS A+  W   R
Sbjct: 127 IVDDFTKESVAIEVDTSISGLRLGRVLDKVAQERPLPTMIRVDHGPEFTSLALDAWAAGR 186

Query: 190 KVDWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHACRMIAAWR 238
            V   +  PGKP QN  +ESFNGR R+ECLN+HLF +L  A   I AWR
Sbjct: 187 GVKLAFTQPGKPTQNAYIESFNGRFRDECLNDHLFSTLHEARYRIEAWR 235