Pairwise Alignments

Query, 227 a.a., two component transcriptional regulator, winged helix family (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 224 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (287), Expect = 9e-31
 Identities = 73/218 (33%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 4   RLLIVEDDPEITSALVRGLALHGYEAEAENRADRALSRLTAGIYSGAIVDVMLGSDSGVE 63
           R+L++EDD  I   + RGL   G++          L  + +      I+D ML    G+ 
Sbjct: 2   RILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGLT 61

Query: 64  LVRTARAHGATLPILMLSALSGVEDRATGLAAGADDYVVKPFHFDELVARL------RVQ 117
           L +  RA G  + ILMLSAL  VE+R  GL  GADDY+ KPFHF+EL+AR+       +Q
Sbjct: 62  LCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNIQ 121

Query: 118 EHRALAQRVSPARLIRTSRRLEMGPDSVTLTEREFDLLALLIRSGEDPQPRSQLHATLWA 177
            H +   R +   L  ++ R+      + LT +E  +L L +R       R ++ A +W 
Sbjct: 122 THTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVWG 181

Query: 178 AEGASTENVVDVYVGYLRRKLETADFGFEIKTVRNRGF 215
                  NVVDVY+  LR+K++       I+T R  G+
Sbjct: 182 IHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGY 219