Pairwise Alignments

Query, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 274 a.a., ISD1, transposase OrfB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  205 bits (521), Expect = 1e-57
 Identities = 101/254 (39%), Positives = 151/254 (59%)

Query: 8   HGVSQRRAGKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVMLERQGIM 67
           HG+S+RR+  AL + R+  RY     DD+    A+  +A    R+G+ ++  +L R G  
Sbjct: 9   HGLSERRSCAALGLSRTVYRYELKPRDDSLIIEALLGLADRYPRYGFGKLFAVLRRHGFR 68

Query: 68  MNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALTDGRQFRV 127
            N K++ R+Y   K+ +RR+G ++       P+ VP   N  WS+DF+ DAL  G++FR 
Sbjct: 69  WNHKRVYRVYCLLKMNLRRKGKKRLPSRNPQPLAVPPCANVCWSIDFMHDALASGQRFRT 128

Query: 128 LAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSVAVLSWCQ 187
             V+DD+SRECLA+  DT+L   RV+R LD ++  RG PA +  DNG EL SV +  W +
Sbjct: 129 FNVLDDFSRECLAIEVDTNLPAARVLRVLDRIVAWRGLPAKLRMDNGPELISVLLADWAE 188

Query: 188 RTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHDYNHHRPH 247
           + G+   +I PGKP QN ++E FN  +R+E+L+  LF SL + +E    W   YN  RPH
Sbjct: 189 KNGVALEFIQPGKPTQNSYIERFNKTYREEVLDFYLFKSLTEVKEITENWLRQYNEERPH 248

Query: 248 SGLGNIPPVEFVAK 261
             LG++ P EF+ K
Sbjct: 249 ESLGDLTPAEFLLK 262