Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 343 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  352 bits (902), Expect = e-101
 Identities = 181/339 (53%), Positives = 230/339 (67%), Gaps = 3/339 (0%)

Query: 3   KSVLFGALAAAGLAATG--AAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVA 60
           KS L    AAA L  +G   A  TL+ VQ +G V CG+S GL GF+  D+ G+  G D  
Sbjct: 5   KSTLAVVTAAAVLGVSGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDSTGKIVGIDAD 64

Query: 61  VCRAVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTG-I 119
            CRAVAAAVFGD T V F+ +  + RF  L SGEIDML+RN+T T SRD  + L+F G I
Sbjct: 65  FCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEIDMLSRNSTMTSSRDAGMGLKFPGFI 124

Query: 120 NYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASE 179
            YYDG GF+    LGV SA ELDGAT+CIQ GTTTELN++D+FRAN + + P+   T+ E
Sbjct: 125 TYYDGIGFLANNKLGVKSAKELDGATICIQAGTTTELNVSDYFRANGLKYTPITFDTSDE 184

Query: 180 AQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDIV 239
           + +   +G CDV T+D S L A R+   SP ++VVLPE ISKEPLGP+VR+GD+EW  IV
Sbjct: 185 SAKSLESGRCDVLTSDKSQLFAQRSKLASPKDYVVLPETISKEPLGPVVRNGDDEWLAIV 244

Query: 240 RWTLNALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKAG 299
           RWT  AL+ AEE GVTS NV   A  T NP++ R+LG +G  G+ L L  DW V ++K  
Sbjct: 245 RWTGYALLNAEEAGVTSKNVEAEAKSTKNPDVARMLGADGEYGKDLKLPKDWVVQIVKQV 304

Query: 300 GNYGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
           GNYGE+FE ++G++TP+ + RGLNA W  GG+ YAPP R
Sbjct: 305 GNYGEMFERNLGKSTPLEIDRGLNALWNAGGIQYAPPVR 343