Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 343 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas fluorescens FW300-N2E3

 Score =  356 bits (913), Expect = e-103
 Identities = 182/341 (53%), Positives = 232/341 (68%), Gaps = 3/341 (0%)

Query: 1   MKKSVLFGALAAAGLAATG--AAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFD 58
           M KS L    AAA L  +G   A  TL+ VQ +G V CG+S GL GF+  D+ G+  G D
Sbjct: 3   MLKSTLAVVTAAAVLGVSGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDSTGKIVGID 62

Query: 59  VAVCRAVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTG 118
              CRAVAAAVFGD T V F+ +  + RF  L SGEIDML+RN+T T SRD  + L+F G
Sbjct: 63  ADYCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEIDMLSRNSTMTSSRDAGMGLKFPG 122

Query: 119 -INYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTA 177
            I YYDG GF+    LGV SA ELDGAT+CIQ GTTTELN++D+FRAN + + P+   T+
Sbjct: 123 FITYYDGVGFLANSKLGVKSAKELDGATICIQAGTTTELNVSDYFRANGLKYTPITFDTS 182

Query: 178 SEAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGD 237
            E+ +   +G CDV T+D S L A R+   SP ++VVLPE ISKEPLGP+VR+GD+EW  
Sbjct: 183 DESAKSLESGRCDVLTSDKSQLYAQRSKLASPKDYVVLPETISKEPLGPVVRNGDDEWLA 242

Query: 238 IVRWTLNALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIK 297
           IVRW   A++ AEE G+TS NV   A  T NP++ RLLGT+G  G+ L L  DW V ++K
Sbjct: 243 IVRWVGYAMLNAEEAGITSKNVEAEAKSTKNPDVARLLGTDGEYGKDLKLPKDWVVKIVK 302

Query: 298 AGGNYGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
             GNYGE+FE ++G++TP+ + RGLNA WT GG+ YAPP R
Sbjct: 303 QVGNYGEVFEKNLGKSTPLEIDRGLNALWTNGGIQYAPPVR 343