Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 342 a.a., ABC-type amino acid transport/signal transduction systems, periplasmic component/domain from Pseudomonas stutzeri RCH2

 Score =  392 bits (1007), Expect = e-114
 Identities = 191/333 (57%), Positives = 238/333 (71%)

Query: 6   LFGALAAAGLAATGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCRAV 65
           + GA +  G++    A  TL+ VQ +G V CGIS GL GF+  DA G++QG DV +CRAV
Sbjct: 10  VLGAASLLGISGLAQAGATLDAVQKKGFVQCGISDGLPGFSFADAKGKYQGIDVDICRAV 69

Query: 66  AAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYDGQ 125
           AAAVFGD + V ++P+T + RF  L SGE+D+L+RNTTWT SRD  + L FTG+ YYDGQ
Sbjct: 70  AAAVFGDASKVKYSPLTAKERFTALQSGEVDVLSRNTTWTSSRDAAMGLNFTGVTYYDGQ 129

Query: 126 GFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQYL 185
           GF+V K LGVSSA ELDGATVCIQ GTTTELNL+D+FRAN   + P+   T+ E+ +   
Sbjct: 130 GFLVNKELGVSSAKELDGATVCIQAGTTTELNLSDYFRANGHKYTPITYDTSDESAKSLE 189

Query: 186 AGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDIVRWTLNA 245
           +G CDV T+D S L A R     P ++VVLPE+ISKEPLGP VR GD EW DIVRWTL A
Sbjct: 190 SGRCDVLTSDQSQLYAQRIKLAKPADYVVLPEVISKEPLGPAVRQGDEEWFDIVRWTLFA 249

Query: 246 LIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKAGGNYGEI 305
           ++ AEELGVTSANV E+A  T NP++ RLLG EG  G+ L L  DWAV ++K  GNYGEI
Sbjct: 250 MLNAEELGVTSANVEEMAKSTKNPDVARLLGAEGEYGKDLKLPKDWAVQIVKQVGNYGEI 309

Query: 306 FETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
           F+ ++G  + + + RGLNA W  GGL YAPP R
Sbjct: 310 FDRNVGAGSELKIERGLNALWNNGGLQYAPPVR 342