Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 342 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  370 bits (949), Expect = e-107
 Identities = 179/335 (53%), Positives = 239/335 (71%), Gaps = 2/335 (0%)

Query: 4   SVLFGALAAAGLAATGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCR 63
           SV+  + A   L+A+ AA  TL++V ++G + CG+STGL GF++ +A GEW+G DV  C+
Sbjct: 10  SVVAASSAMLSLSAS-AAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEGIDVEYCQ 68

Query: 64  AVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYD 123
           A+AAAV GD T V F P+T + RF  L SGEID+L+RNTTWT  RD  L L F G+NYYD
Sbjct: 69  AMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLNFVGVNYYD 128

Query: 124 GQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQ 183
           GQGFMV K LGV SA EL+GA+VC+Q GTTTELNLAD+FR + ++++PV   TA++  + 
Sbjct: 129 GQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFDTAAQTSKG 188

Query: 184 YLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDIVRWTL 243
           + AG CDV TTD SGL A R + E PD  VVLPEIISKEPLGP+VR  D++W ++ +W L
Sbjct: 189 FDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKWFNVAKWVL 248

Query: 244 NALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKAGGNYG 303
            A++ AEE G+TS NV E+   +DNPE+ R+LG +G  G  LG+  DW+  ++K  GNYG
Sbjct: 249 YAMVNAEEYGITSKNVDEMMK-SDNPEVKRILGLDGPKGTGLGIRDDWSYQIVKQVGNYG 307

Query: 304 EIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
           E F+  +G  +P+ + RG+NA W  GG +YAPP R
Sbjct: 308 ESFDRTVGSGSPLKIDRGVNALWNAGGFMYAPPIR 342